Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08035

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08025 and ABID97_RS08030 are separated by 82 nucleotidesABID97_RS08030 and ABID97_RS08035 are separated by 28 nucleotidesABID97_RS08035 and ABID97_RS08040 are separated by 209 nucleotidesABID97_RS08040 and ABID97_RS08045 are separated by 27 nucleotides ABID97_RS08025: ABID97_RS08025 - nuclear transport factor 2 family protein, at 1,686,679 to 1,687,101 _RS08025 ABID97_RS08030: ABID97_RS08030 - cyanase, at 1,687,184 to 1,687,627 _RS08030 ABID97_RS08035: ABID97_RS08035 - SDR family oxidoreductase, at 1,687,656 to 1,688,408 _RS08035 ABID97_RS08040: ABID97_RS08040 - DUF4329 domain-containing protein, at 1,688,618 to 1,689,136 _RS08040 ABID97_RS08045: ABID97_RS08045 - NAD(P)H-dependent oxidoreductase, at 1,689,164 to 1,689,754 _RS08045 Position (kb) 1687 1688 1689Strain fitness (log2 ratio) -3 -2 -1 0 1at 1686.790 kb on + strand, within ABID97_RS08025at 1686.850 kb on + strand, within ABID97_RS08025at 1686.950 kb on - strand, within ABID97_RS08025at 1687.397 kb on + strand, within ABID97_RS08030at 1687.397 kb on + strand, within ABID97_RS08030at 1687.398 kb on - strand, within ABID97_RS08030at 1687.398 kb on - strand, within ABID97_RS08030at 1687.442 kb on + strand, within ABID97_RS08030at 1687.442 kb on + strand, within ABID97_RS08030at 1687.443 kb on - strand, within ABID97_RS08030at 1687.451 kb on + strand, within ABID97_RS08030at 1687.452 kb on - strand, within ABID97_RS08030at 1687.946 kb on - strand, within ABID97_RS08035at 1688.212 kb on + strand, within ABID97_RS08035at 1688.567 kb on + strandat 1688.568 kb on - strandat 1688.868 kb on - strand, within ABID97_RS08040at 1688.871 kb on - strand, within ABID97_RS08040at 1688.871 kb on - strand, within ABID97_RS08040at 1688.972 kb on + strand, within ABID97_RS08040at 1689.169 kb on - strandat 1689.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,686,790 + ABID97_RS08025 0.26 +0.1
1,686,850 + ABID97_RS08025 0.40 +1.6
1,686,950 - ABID97_RS08025 0.64 +0.1
1,687,397 + ABID97_RS08030 0.48 -0.1
1,687,397 + ABID97_RS08030 0.48 -1.4
1,687,398 - ABID97_RS08030 0.48 -0.5
1,687,398 - ABID97_RS08030 0.48 -2.4
1,687,442 + ABID97_RS08030 0.58 +0.2
1,687,442 + ABID97_RS08030 0.58 -0.1
1,687,443 - ABID97_RS08030 0.58 -2.3
1,687,451 + ABID97_RS08030 0.60 +0.2
1,687,452 - ABID97_RS08030 0.60 -0.0
1,687,946 - ABID97_RS08035 0.39 +0.7
1,688,212 + ABID97_RS08035 0.74 -1.6
1,688,567 + +1.3
1,688,568 - -2.8
1,688,868 - ABID97_RS08040 0.48 +0.7
1,688,871 - ABID97_RS08040 0.49 -0.7
1,688,871 - ABID97_RS08040 0.49 +0.3
1,688,972 + ABID97_RS08040 0.68 +1.6
1,689,169 - +0.2
1,689,169 - +0.4

Or see this region's nucleotide sequence