Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07615 and ABID97_RS07620 overlap by 17 nucleotides ABID97_RS07620 and ABID97_RS07625 overlap by 4 nucleotides ABID97_RS07625 and ABID97_RS07630 overlap by 4 nucleotides ABID97_RS07630 and ABID97_RS07635 overlap by 8 nucleotides
ABID97_RS07615: ABID97_RS07615 - ATP-binding protein, at 1,608,083 to 1,609,492
_RS07615
ABID97_RS07620: ABID97_RS07620 - SURF1 family protein, at 1,609,476 to 1,610,318
_RS07620
ABID97_RS07625: ABID97_RS07625 - cytochrome o ubiquinol oxidase subunit IV, at 1,610,315 to 1,610,722
_RS07625
ABID97_RS07630: ABID97_RS07630 - cytochrome o ubiquinol oxidase subunit III, at 1,610,719 to 1,611,384
_RS07630
ABID97_RS07635: ABID97_RS07635 - cytochrome o ubiquinol oxidase subunit I, at 1,611,377 to 1,613,383
_RS07635
Position (kb) 1610
1611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1609.616 kb on - strand, within ABID97_RS07620 at 1609.717 kb on + strand, within ABID97_RS07620 at 1609.717 kb on + strand, within ABID97_RS07620 at 1609.717 kb on + strand, within ABID97_RS07620 at 1609.718 kb on - strand, within ABID97_RS07620 at 1610.047 kb on - strand, within ABID97_RS07620 at 1610.047 kb on - strand, within ABID97_RS07620 at 1610.186 kb on + strand, within ABID97_RS07620 at 1610.373 kb on + strand, within ABID97_RS07625 at 1610.373 kb on + strand, within ABID97_RS07625 at 1610.373 kb on + strand, within ABID97_RS07625 at 1610.373 kb on + strand, within ABID97_RS07625 at 1610.481 kb on + strand, within ABID97_RS07625 at 1610.481 kb on + strand, within ABID97_RS07625 at 1610.481 kb on + strand, within ABID97_RS07625 at 1610.623 kb on - strand, within ABID97_RS07625 at 1610.623 kb on - strand, within ABID97_RS07625 at 1610.623 kb on - strand, within ABID97_RS07625 at 1610.985 kb on - strand, within ABID97_RS07630 at 1611.089 kb on + strand, within ABID97_RS07630 at 1611.177 kb on - strand, within ABID97_RS07630 at 1611.375 kb on + strand at 1611.376 kb on - strand at 1611.463 kb on - strand at 1611.463 kb on - strand at 1611.463 kb on - strand at 1611.463 kb on - strand at 1611.639 kb on + strand, within ABID97_RS07635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 1,609,616 - ABID97_RS07620 0.17 +0.9 1,609,717 + ABID97_RS07620 0.29 +0.4 1,609,717 + ABID97_RS07620 0.29 +0.0 1,609,717 + ABID97_RS07620 0.29 -0.6 1,609,718 - ABID97_RS07620 0.29 +0.6 1,610,047 - ABID97_RS07620 0.68 +0.5 1,610,047 - ABID97_RS07620 0.68 +0.5 1,610,186 + ABID97_RS07620 0.84 -1.1 1,610,373 + ABID97_RS07625 0.14 -0.6 1,610,373 + ABID97_RS07625 0.14 -0.1 1,610,373 + ABID97_RS07625 0.14 -0.0 1,610,373 + ABID97_RS07625 0.14 +0.9 1,610,481 + ABID97_RS07625 0.41 +1.2 1,610,481 + ABID97_RS07625 0.41 +1.8 1,610,481 + ABID97_RS07625 0.41 -1.9 1,610,623 - ABID97_RS07625 0.75 -0.7 1,610,623 - ABID97_RS07625 0.75 +0.3 1,610,623 - ABID97_RS07625 0.75 -0.9 1,610,985 - ABID97_RS07630 0.40 -1.1 1,611,089 + ABID97_RS07630 0.56 -0.7 1,611,177 - ABID97_RS07630 0.69 -0.7 1,611,375 + +1.4 1,611,376 - -1.1 1,611,463 - +0.3 1,611,463 - +0.2 1,611,463 - -0.1 1,611,463 - +0.2 1,611,639 + ABID97_RS07635 0.13 -3.4
Or see this region's nucleotide sequence