Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07495 and ABID97_RS07500 are separated by 146 nucleotides ABID97_RS07500 and ABID97_RS07505 are separated by 15 nucleotides
ABID97_RS07495: ABID97_RS07495 - patatin-like phospholipase family protein, at 1,581,919 to 1,583,112
_RS07495
ABID97_RS07500: ABID97_RS07500 - iron-sulfur cluster carrier protein ApbC, at 1,583,259 to 1,584,350
_RS07500
ABID97_RS07505: ABID97_RS07505 - LysR substrate-binding domain-containing protein, at 1,584,366 to 1,585,310
_RS07505
Position (kb) 1583
1584
1585 Strain fitness (log2 ratio) -2
-1
0
1 at 1582.328 kb on + strand, within ABID97_RS07495 at 1582.329 kb on - strand, within ABID97_RS07495 at 1582.329 kb on - strand, within ABID97_RS07495 at 1582.457 kb on + strand, within ABID97_RS07495 at 1582.457 kb on + strand, within ABID97_RS07495 at 1582.458 kb on - strand, within ABID97_RS07495 at 1582.464 kb on + strand, within ABID97_RS07495 at 1582.465 kb on - strand, within ABID97_RS07495 at 1582.465 kb on - strand, within ABID97_RS07495 at 1582.631 kb on + strand, within ABID97_RS07495 at 1582.632 kb on - strand, within ABID97_RS07495 at 1582.632 kb on - strand, within ABID97_RS07495 at 1582.632 kb on - strand, within ABID97_RS07495 at 1582.850 kb on + strand, within ABID97_RS07495 at 1583.670 kb on + strand, within ABID97_RS07500 at 1583.670 kb on + strand, within ABID97_RS07500 at 1583.670 kb on + strand, within ABID97_RS07500 at 1583.880 kb on + strand, within ABID97_RS07500 at 1583.881 kb on - strand, within ABID97_RS07500 at 1584.153 kb on + strand, within ABID97_RS07500 at 1584.153 kb on + strand, within ABID97_RS07500 at 1584.252 kb on + strand at 1584.252 kb on + strand at 1584.529 kb on - strand, within ABID97_RS07505 at 1584.867 kb on + strand, within ABID97_RS07505 at 1584.867 kb on + strand, within ABID97_RS07505 at 1584.867 kb on + strand, within ABID97_RS07505 at 1584.868 kb on - strand, within ABID97_RS07505 at 1584.868 kb on - strand, within ABID97_RS07505 at 1585.061 kb on + strand, within ABID97_RS07505 at 1585.061 kb on + strand, within ABID97_RS07505 at 1585.061 kb on + strand, within ABID97_RS07505 at 1585.062 kb on - strand, within ABID97_RS07505 at 1585.062 kb on - strand, within ABID97_RS07505 at 1585.062 kb on - strand, within ABID97_RS07505 at 1585.062 kb on - strand, within ABID97_RS07505 at 1585.138 kb on - strand, within ABID97_RS07505 at 1585.309 kb on - strand at 1585.343 kb on + strand at 1585.344 kb on - strand at 1585.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 1,582,328 + ABID97_RS07495 0.34 -0.2 1,582,329 - ABID97_RS07495 0.34 -0.1 1,582,329 - ABID97_RS07495 0.34 +0.2 1,582,457 + ABID97_RS07495 0.45 +1.2 1,582,457 + ABID97_RS07495 0.45 -0.6 1,582,458 - ABID97_RS07495 0.45 -0.6 1,582,464 + ABID97_RS07495 0.46 +0.2 1,582,465 - ABID97_RS07495 0.46 +0.7 1,582,465 - ABID97_RS07495 0.46 +0.1 1,582,631 + ABID97_RS07495 0.60 +0.2 1,582,632 - ABID97_RS07495 0.60 -0.5 1,582,632 - ABID97_RS07495 0.60 +0.2 1,582,632 - ABID97_RS07495 0.60 +0.4 1,582,850 + ABID97_RS07495 0.78 -0.3 1,583,670 + ABID97_RS07500 0.38 -2.2 1,583,670 + ABID97_RS07500 0.38 +0.0 1,583,670 + ABID97_RS07500 0.38 -0.3 1,583,880 + ABID97_RS07500 0.57 -2.4 1,583,881 - ABID97_RS07500 0.57 +0.9 1,584,153 + ABID97_RS07500 0.82 -2.2 1,584,153 + ABID97_RS07500 0.82 -2.1 1,584,252 + -1.7 1,584,252 + -2.7 1,584,529 - ABID97_RS07505 0.17 -0.4 1,584,867 + ABID97_RS07505 0.53 -0.2 1,584,867 + ABID97_RS07505 0.53 -0.6 1,584,867 + ABID97_RS07505 0.53 -0.4 1,584,868 - ABID97_RS07505 0.53 +0.3 1,584,868 - ABID97_RS07505 0.53 -1.0 1,585,061 + ABID97_RS07505 0.74 +0.5 1,585,061 + ABID97_RS07505 0.74 -1.4 1,585,061 + ABID97_RS07505 0.74 -0.9 1,585,062 - ABID97_RS07505 0.74 -0.1 1,585,062 - ABID97_RS07505 0.74 -0.2 1,585,062 - ABID97_RS07505 0.74 -1.7 1,585,062 - ABID97_RS07505 0.74 +0.2 1,585,138 - ABID97_RS07505 0.82 +0.9 1,585,309 - +0.7 1,585,343 + +0.9 1,585,344 - +0.5 1,585,347 + -0.1
Or see this region's nucleotide sequence