Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05660

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05655 and ABID97_RS05660 are separated by 432 nucleotidesABID97_RS05660 and ABID97_RS05665 overlap by 4 nucleotidesABID97_RS05665 and ABID97_RS05670 are separated by 37 nucleotides ABID97_RS05655: ABID97_RS05655 - D-amino acid dehydrogenase, at 1,188,709 to 1,190,025 _RS05655 ABID97_RS05660: ABID97_RS05660 - dTDP-glucose 4,6-dehydratase, at 1,190,458 to 1,191,540 _RS05660 ABID97_RS05665: ABID97_RS05665 - dTDP-4-dehydrorhamnose reductase, at 1,191,537 to 1,192,427 _RS05665 ABID97_RS05670: ABID97_RS05670 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,192,465 to 1,193,364 _RS05670 Position (kb) 1190 1191 1192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1189.602 kb on + strand, within ABID97_RS05655at 1189.604 kb on + strand, within ABID97_RS05655at 1189.604 kb on + strand, within ABID97_RS05655at 1189.604 kb on + strand, within ABID97_RS05655at 1189.604 kb on + strand, within ABID97_RS05655at 1189.604 kb on + strand, within ABID97_RS05655at 1189.605 kb on - strand, within ABID97_RS05655at 1189.605 kb on - strand, within ABID97_RS05655at 1189.605 kb on - strand, within ABID97_RS05655at 1189.605 kb on - strand, within ABID97_RS05655at 1189.605 kb on - strand, within ABID97_RS05655at 1189.638 kb on - strand, within ABID97_RS05655at 1189.638 kb on - strand, within ABID97_RS05655at 1189.638 kb on - strand, within ABID97_RS05655at 1189.685 kb on + strand, within ABID97_RS05655at 1189.685 kb on + strand, within ABID97_RS05655at 1189.685 kb on + strand, within ABID97_RS05655at 1189.686 kb on - strand, within ABID97_RS05655at 1189.686 kb on - strand, within ABID97_RS05655at 1189.686 kb on - strand, within ABID97_RS05655at 1189.686 kb on - strand, within ABID97_RS05655at 1189.686 kb on - strand, within ABID97_RS05655at 1189.686 kb on - strand, within ABID97_RS05655at 1189.973 kb on + strandat 1189.973 kb on + strandat 1189.973 kb on + strandat 1189.973 kb on + strandat 1189.973 kb on + strandat 1189.973 kb on + strandat 1189.973 kb on + strandat 1189.973 kb on + strandat 1189.974 kb on - strandat 1189.974 kb on - strandat 1189.976 kb on + strandat 1189.977 kb on - strandat 1189.977 kb on - strandat 1190.039 kb on + strandat 1190.039 kb on + strandat 1190.039 kb on + strandat 1190.040 kb on - strandat 1190.135 kb on + strandat 1190.217 kb on + strandat 1190.217 kb on + strandat 1190.218 kb on - strandat 1190.218 kb on - strandat 1190.233 kb on - strandat 1190.233 kb on - strandat 1190.282 kb on + strandat 1190.339 kb on + strandat 1190.339 kb on + strandat 1190.339 kb on + strandat 1190.340 kb on - strandat 1190.340 kb on - strandat 1190.340 kb on - strandat 1190.340 kb on - strandat 1190.350 kb on + strandat 1190.350 kb on + strandat 1190.350 kb on + strandat 1190.351 kb on - strandat 1190.351 kb on - strandat 1191.505 kb on + strandat 1191.505 kb on + strandat 1191.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,189,602 + ABID97_RS05655 0.68 +0.1
1,189,604 + ABID97_RS05655 0.68 +0.6
1,189,604 + ABID97_RS05655 0.68 -0.2
1,189,604 + ABID97_RS05655 0.68 -0.3
1,189,604 + ABID97_RS05655 0.68 -0.1
1,189,604 + ABID97_RS05655 0.68 -0.2
1,189,605 - ABID97_RS05655 0.68 -0.2
1,189,605 - ABID97_RS05655 0.68 -0.4
1,189,605 - ABID97_RS05655 0.68 -0.5
1,189,605 - ABID97_RS05655 0.68 -1.8
1,189,605 - ABID97_RS05655 0.68 +2.6
1,189,638 - ABID97_RS05655 0.71 +0.0
1,189,638 - ABID97_RS05655 0.71 +0.7
1,189,638 - ABID97_RS05655 0.71 -0.2
1,189,685 + ABID97_RS05655 0.74 -0.3
1,189,685 + ABID97_RS05655 0.74 +1.2
1,189,685 + ABID97_RS05655 0.74 +0.3
1,189,686 - ABID97_RS05655 0.74 -0.4
1,189,686 - ABID97_RS05655 0.74 +0.1
1,189,686 - ABID97_RS05655 0.74 -2.9
1,189,686 - ABID97_RS05655 0.74 +0.0
1,189,686 - ABID97_RS05655 0.74 +1.8
1,189,686 - ABID97_RS05655 0.74 +0.2
1,189,973 + +0.1
1,189,973 + +0.3
1,189,973 + +0.5
1,189,973 + +1.0
1,189,973 + -0.0
1,189,973 + -0.6
1,189,973 + +0.1
1,189,973 + +0.0
1,189,974 - -0.2
1,189,974 - +0.1
1,189,976 + -0.4
1,189,977 - -0.5
1,189,977 - -0.0
1,190,039 + -0.2
1,190,039 + +0.1
1,190,039 + +0.4
1,190,040 - +0.2
1,190,135 + +0.1
1,190,217 + +0.4
1,190,217 + -0.1
1,190,218 - -0.0
1,190,218 - +0.8
1,190,233 - -0.2
1,190,233 - +0.1
1,190,282 + +0.5
1,190,339 + +0.1
1,190,339 + -0.1
1,190,339 + -0.8
1,190,340 - +0.2
1,190,340 - +0.1
1,190,340 - +0.6
1,190,340 - +0.2
1,190,350 + -0.0
1,190,350 + -0.2
1,190,350 + +0.0
1,190,351 - -0.5
1,190,351 - +0.3
1,191,505 + +1.7
1,191,505 + +0.3
1,191,506 - -0.1

Or see this region's nucleotide sequence