Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04430 and ABID97_RS04435 are separated by 39 nucleotides ABID97_RS04435 and ABID97_RS04440 overlap by 4 nucleotides ABID97_RS04440 and ABID97_RS04445 are separated by 100 nucleotides
ABID97_RS04430: ABID97_RS04430 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 916,956 to 918,086
_RS04430
ABID97_RS04435: ABID97_RS04435 - NAD(P) transhydrogenase subunit alpha, at 918,126 to 918,458
_RS04435
ABID97_RS04440: ABID97_RS04440 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 918,455 to 919,882
_RS04440
ABID97_RS04445: ABID97_RS04445 - long-chain-fatty-acid--CoA ligase, at 919,983 to 921,662
_RS04445
Position (kb) 918
919
920 Strain fitness (log2 ratio) -1
0
1 at 919.260 kb on - strand, within ABID97_RS04440 at 919.260 kb on - strand, within ABID97_RS04440 at 920.049 kb on + strand at 920.091 kb on + strand at 920.091 kb on + strand at 920.110 kb on - strand at 920.136 kb on + strand at 920.176 kb on - strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.479 kb on - strand, within ABID97_RS04445 at 920.479 kb on - strand, within ABID97_RS04445 at 920.479 kb on - strand, within ABID97_RS04445 at 920.515 kb on - strand, within ABID97_RS04445 at 920.620 kb on - strand, within ABID97_RS04445 at 920.620 kb on - strand, within ABID97_RS04445 at 920.620 kb on - strand, within ABID97_RS04445 at 920.772 kb on + strand, within ABID97_RS04445 at 920.772 kb on + strand, within ABID97_RS04445
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 919,260 - ABID97_RS04440 0.56 -0.1 919,260 - ABID97_RS04440 0.56 +0.1 920,049 + -0.1 920,091 + +0.2 920,091 + -0.3 920,110 - +0.2 920,136 + +0.6 920,176 - ABID97_RS04445 0.11 +0.1 920,478 + ABID97_RS04445 0.29 -0.7 920,478 + ABID97_RS04445 0.29 +0.2 920,478 + ABID97_RS04445 0.29 -1.1 920,478 + ABID97_RS04445 0.29 +0.0 920,478 + ABID97_RS04445 0.29 +1.1 920,479 - ABID97_RS04445 0.30 +1.3 920,479 - ABID97_RS04445 0.30 +0.4 920,479 - ABID97_RS04445 0.30 +0.8 920,515 - ABID97_RS04445 0.32 -0.3 920,620 - ABID97_RS04445 0.38 +0.2 920,620 - ABID97_RS04445 0.38 +1.3 920,620 - ABID97_RS04445 0.38 -0.7 920,772 + ABID97_RS04445 0.47 -0.1 920,772 + ABID97_RS04445 0.47 +0.1
Or see this region's nucleotide sequence