Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03270 and ABID97_RS03275 are separated by 0 nucleotides ABID97_RS03275 and ABID97_RS03280 overlap by 58 nucleotides ABID97_RS03280 and ABID97_RS03285 are separated by 40 nucleotides ABID97_RS03285 and ABID97_RS03290 are separated by 90 nucleotides
ABID97_RS03270: ABID97_RS03270 - LacI family DNA-binding transcriptional regulator, at 661,882 to 662,913
_RS03270
ABID97_RS03275: ABID97_RS03275 - hypothetical protein, at 662,914 to 663,429
_RS03275
ABID97_RS03280: ABID97_RS03280 - hypothetical protein, at 663,372 to 664,613
_RS03280
ABID97_RS03285: ABID97_RS03285 - DUF1127 domain-containing protein, at 664,654 to 664,848
_RS03285
ABID97_RS03290: ABID97_RS03290 - LysR family transcriptional regulator, at 664,939 to 665,829
_RS03290
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1 at 662.560 kb on + strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.708 kb on - strand, within ABID97_RS03270 at 663.033 kb on - strand, within ABID97_RS03275 at 663.033 kb on - strand, within ABID97_RS03275 at 663.378 kb on - strand at 663.820 kb on + strand, within ABID97_RS03280 at 663.863 kb on - strand, within ABID97_RS03280 at 664.894 kb on + strand at 664.895 kb on - strand at 665.170 kb on - strand, within ABID97_RS03290 at 665.545 kb on + strand, within ABID97_RS03290 at 665.546 kb on - strand, within ABID97_RS03290 at 665.546 kb on - strand, within ABID97_RS03290 at 665.611 kb on + strand, within ABID97_RS03290 at 665.612 kb on - strand, within ABID97_RS03290
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 662,560 + ABID97_RS03270 0.66 +0.6 662,561 - ABID97_RS03270 0.66 +0.5 662,561 - ABID97_RS03270 0.66 +0.2 662,561 - ABID97_RS03270 0.66 -0.1 662,708 - ABID97_RS03270 0.80 -0.1 663,033 - ABID97_RS03275 0.23 -1.6 663,033 - ABID97_RS03275 0.23 +0.5 663,378 - -0.2 663,820 + ABID97_RS03280 0.36 -1.9 663,863 - ABID97_RS03280 0.40 -0.1 664,894 + +1.0 664,895 - +0.3 665,170 - ABID97_RS03290 0.26 +0.7 665,545 + ABID97_RS03290 0.68 +1.3 665,546 - ABID97_RS03290 0.68 -0.2 665,546 - ABID97_RS03290 0.68 +0.1 665,611 + ABID97_RS03290 0.75 +0.0 665,612 - ABID97_RS03290 0.76 +0.2
Or see this region's nucleotide sequence