Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03100 and ABID97_RS03105 overlap by 4 nucleotides ABID97_RS03105 and ABID97_RS03110 are separated by 200 nucleotides
ABID97_RS03100: ABID97_RS03100 - 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase, at 627,795 to 629,345
_RS03100
ABID97_RS03105: ABID97_RS03105 - DUF4863 family protein, at 629,342 to 629,815
_RS03105
ABID97_RS03110: ABID97_RS03110 - helix-turn-helix transcriptional regulator, at 630,016 to 630,960
_RS03110
Position (kb) 629
630 Strain fitness (log2 ratio) -2
-1
0
1 at 629.095 kb on + strand, within ABID97_RS03100 at 629.095 kb on + strand, within ABID97_RS03100 at 629.096 kb on - strand, within ABID97_RS03100 at 629.096 kb on - strand, within ABID97_RS03100 at 629.096 kb on - strand, within ABID97_RS03100 at 629.098 kb on + strand, within ABID97_RS03100 at 629.098 kb on + strand, within ABID97_RS03100 at 629.098 kb on + strand, within ABID97_RS03100 at 629.099 kb on - strand, within ABID97_RS03100 at 629.099 kb on - strand, within ABID97_RS03100 at 629.099 kb on - strand, within ABID97_RS03100 at 629.161 kb on + strand, within ABID97_RS03100 at 629.161 kb on + strand, within ABID97_RS03100 at 629.161 kb on + strand at 629.379 kb on + strand at 629.379 kb on + strand at 629.380 kb on - strand at 629.380 kb on - strand at 629.380 kb on - strand at 629.436 kb on + strand, within ABID97_RS03105 at 629.613 kb on + strand, within ABID97_RS03105 at 629.614 kb on - strand, within ABID97_RS03105 at 629.620 kb on + strand, within ABID97_RS03105 at 629.926 kb on - strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.030 kb on - strand at 630.030 kb on - strand at 630.221 kb on - strand, within ABID97_RS03110 at 630.643 kb on + strand, within ABID97_RS03110 at 630.643 kb on + strand, within ABID97_RS03110 at 630.644 kb on - strand, within ABID97_RS03110 at 630.644 kb on - strand, within ABID97_RS03110 at 630.644 kb on - strand, within ABID97_RS03110
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 629,095 + ABID97_RS03100 0.84 -0.7 629,095 + ABID97_RS03100 0.84 -0.1 629,096 - ABID97_RS03100 0.84 -0.4 629,096 - ABID97_RS03100 0.84 +0.5 629,096 - ABID97_RS03100 0.84 -0.5 629,098 + ABID97_RS03100 0.84 +0.1 629,098 + ABID97_RS03100 0.84 -0.5 629,098 + ABID97_RS03100 0.84 -0.1 629,099 - ABID97_RS03100 0.84 +0.3 629,099 - ABID97_RS03100 0.84 +0.2 629,099 - ABID97_RS03100 0.84 -0.6 629,161 + ABID97_RS03100 0.88 -0.2 629,161 + ABID97_RS03100 0.88 +0.4 629,161 + -0.2 629,379 + +0.3 629,379 + -0.8 629,380 - -0.6 629,380 - +0.5 629,380 - -0.9 629,436 + ABID97_RS03105 0.20 -0.5 629,613 + ABID97_RS03105 0.57 -0.3 629,614 - ABID97_RS03105 0.57 -1.8 629,620 + ABID97_RS03105 0.59 +0.3 629,926 - +0.5 630,029 + -1.5 630,029 + -1.9 630,029 + -0.6 630,029 + -0.4 630,029 + -1.5 630,029 + -0.3 630,029 + +0.2 630,030 - +0.7 630,030 - -1.2 630,221 - ABID97_RS03110 0.22 -1.5 630,643 + ABID97_RS03110 0.66 -0.1 630,643 + ABID97_RS03110 0.66 -0.9 630,644 - ABID97_RS03110 0.66 -1.3 630,644 - ABID97_RS03110 0.66 -1.7 630,644 - ABID97_RS03110 0.66 -2.1
Or see this region's nucleotide sequence