Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02805 and ABID97_RS02810 are separated by 568 nucleotides ABID97_RS02810 and ABID97_RS02815 are separated by 6 nucleotides ABID97_RS02815 and ABID97_RS02820 overlap by 4 nucleotides ABID97_RS02820 and ABID97_RS02825 are separated by 125 nucleotides
ABID97_RS02805: ABID97_RS02805 - two-component system response regulator CreB, at 574,342 to 575,127
_RS02805
ABID97_RS02810: ABID97_RS02810 - TerB family tellurite resistance protein, at 575,696 to 576,655
_RS02810
ABID97_RS02815: ABID97_RS02815 - Cu(I)-responsive transcriptional regulator, at 576,662 to 577,078
_RS02815
ABID97_RS02820: ABID97_RS02820 - cation transporter, at 577,075 to 577,269
_RS02820
ABID97_RS02825: ABID97_RS02825 - heavy metal translocating P-type ATPase, at 577,395 to 579,683
_RS02825
Position (kb) 575
576
577 Strain fitness (log2 ratio) -1
0
1
2 at 574.808 kb on + strand, within ABID97_RS02805 at 574.808 kb on + strand, within ABID97_RS02805 at 574.808 kb on + strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.882 kb on + strand, within ABID97_RS02805 at 575.063 kb on + strand at 575.063 kb on + strand at 575.063 kb on + strand at 575.064 kb on - strand at 575.064 kb on - strand at 575.064 kb on - strand at 575.139 kb on - strand at 575.240 kb on + strand at 575.241 kb on - strand at 575.241 kb on - strand at 575.241 kb on - strand at 575.510 kb on + strand at 575.526 kb on - strand at 575.526 kb on - strand at 575.540 kb on + strand at 575.578 kb on - strand at 575.578 kb on - strand at 575.844 kb on - strand, within ABID97_RS02810 at 575.924 kb on + strand, within ABID97_RS02810 at 575.924 kb on + strand, within ABID97_RS02810 at 575.925 kb on - strand, within ABID97_RS02810 at 575.925 kb on - strand, within ABID97_RS02810 at 576.019 kb on + strand, within ABID97_RS02810 at 576.019 kb on + strand, within ABID97_RS02810 at 576.019 kb on + strand, within ABID97_RS02810 at 576.019 kb on + strand, within ABID97_RS02810 at 576.019 kb on + strand, within ABID97_RS02810 at 576.019 kb on + strand, within ABID97_RS02810 at 576.019 kb on + strand, within ABID97_RS02810 at 576.020 kb on - strand, within ABID97_RS02810 at 576.020 kb on - strand, within ABID97_RS02810 at 576.020 kb on - strand, within ABID97_RS02810 at 576.257 kb on + strand, within ABID97_RS02810 at 576.257 kb on + strand, within ABID97_RS02810 at 576.258 kb on - strand, within ABID97_RS02810 at 576.348 kb on - strand, within ABID97_RS02810 at 576.348 kb on - strand, within ABID97_RS02810 at 576.348 kb on - strand, within ABID97_RS02810 at 576.348 kb on - strand, within ABID97_RS02810 at 576.348 kb on - strand, within ABID97_RS02810 at 576.348 kb on - strand, within ABID97_RS02810 at 576.464 kb on + strand, within ABID97_RS02810 at 576.464 kb on + strand, within ABID97_RS02810 at 576.465 kb on - strand, within ABID97_RS02810 at 576.465 kb on - strand, within ABID97_RS02810 at 576.465 kb on - strand, within ABID97_RS02810 at 576.491 kb on + strand, within ABID97_RS02810 at 576.492 kb on - strand, within ABID97_RS02810 at 576.494 kb on + strand, within ABID97_RS02810 at 576.494 kb on + strand, within ABID97_RS02810 at 576.495 kb on - strand, within ABID97_RS02810 at 576.582 kb on - strand at 576.945 kb on + strand, within ABID97_RS02815 at 576.945 kb on + strand, within ABID97_RS02815 at 576.946 kb on - strand, within ABID97_RS02815 at 577.002 kb on + strand, within ABID97_RS02815 at 577.003 kb on - strand, within ABID97_RS02815 at 577.003 kb on - strand, within ABID97_RS02815 at 577.089 kb on - strand at 577.383 kb on + strand at 577.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 574,808 + ABID97_RS02805 0.59 -0.3 574,808 + ABID97_RS02805 0.59 +0.6 574,808 + ABID97_RS02805 0.59 -1.6 574,809 - ABID97_RS02805 0.59 +1.4 574,809 - ABID97_RS02805 0.59 +1.8 574,809 - ABID97_RS02805 0.59 +0.5 574,809 - ABID97_RS02805 0.59 -0.0 574,809 - ABID97_RS02805 0.59 -0.4 574,882 + ABID97_RS02805 0.69 -1.2 575,063 + +0.2 575,063 + -0.9 575,063 + -0.3 575,064 - -0.5 575,064 - -0.7 575,064 - +0.0 575,139 - +0.1 575,240 + +0.1 575,241 - -0.7 575,241 - -0.6 575,241 - -0.1 575,510 + -0.2 575,526 - -0.2 575,526 - -0.2 575,540 + +0.3 575,578 - -0.5 575,578 - +0.3 575,844 - ABID97_RS02810 0.15 -0.7 575,924 + ABID97_RS02810 0.24 -0.5 575,924 + ABID97_RS02810 0.24 -0.5 575,925 - ABID97_RS02810 0.24 +0.0 575,925 - ABID97_RS02810 0.24 -0.7 576,019 + ABID97_RS02810 0.34 +0.3 576,019 + ABID97_RS02810 0.34 +1.5 576,019 + ABID97_RS02810 0.34 -0.2 576,019 + ABID97_RS02810 0.34 -0.2 576,019 + ABID97_RS02810 0.34 +0.1 576,019 + ABID97_RS02810 0.34 +0.3 576,019 + ABID97_RS02810 0.34 -0.3 576,020 - ABID97_RS02810 0.34 +0.6 576,020 - ABID97_RS02810 0.34 -0.0 576,020 - ABID97_RS02810 0.34 +0.2 576,257 + ABID97_RS02810 0.58 +0.2 576,257 + ABID97_RS02810 0.58 -0.8 576,258 - ABID97_RS02810 0.59 -0.1 576,348 - ABID97_RS02810 0.68 -0.0 576,348 - ABID97_RS02810 0.68 +0.0 576,348 - ABID97_RS02810 0.68 +1.1 576,348 - ABID97_RS02810 0.68 -1.1 576,348 - ABID97_RS02810 0.68 +0.0 576,348 - ABID97_RS02810 0.68 +0.1 576,464 + ABID97_RS02810 0.80 +0.2 576,464 + ABID97_RS02810 0.80 -0.2 576,465 - ABID97_RS02810 0.80 +0.8 576,465 - ABID97_RS02810 0.80 -0.8 576,465 - ABID97_RS02810 0.80 -0.2 576,491 + ABID97_RS02810 0.83 +0.1 576,492 - ABID97_RS02810 0.83 +0.1 576,494 + ABID97_RS02810 0.83 +0.3 576,494 + ABID97_RS02810 0.83 -0.8 576,495 - ABID97_RS02810 0.83 -1.5 576,582 - -0.1 576,945 + ABID97_RS02815 0.68 +0.1 576,945 + ABID97_RS02815 0.68 +0.5 576,946 - ABID97_RS02815 0.68 -0.1 577,002 + ABID97_RS02815 0.82 -0.3 577,003 - ABID97_RS02815 0.82 +0.3 577,003 - ABID97_RS02815 0.82 +0.7 577,089 - -0.1 577,383 + +0.2 577,606 + +0.2
Or see this region's nucleotide sequence