Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02785 and ABID97_RS02790 are separated by 12 nucleotides ABID97_RS02790 and ABID97_RS02795 are separated by 103 nucleotides ABID97_RS02795 and ABID97_RS02800 are separated by 6 nucleotides
ABID97_RS02785: ABID97_RS02785 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 568,474 to 569,766
_RS02785
ABID97_RS02790: ABID97_RS02790 - penicillin-binding protein 1A, at 569,779 to 572,184
_RS02790
ABID97_RS02795: ABID97_RS02795 - hypothetical protein, at 572,288 to 572,893
_RS02795
ABID97_RS02800: ABID97_RS02800 - two-component system sensor histidine kinase CreC, at 572,900 to 574,345
_RS02800
Position (kb) 569
570
571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.087 kb on - strand, within ABID97_RS02785 at 569.087 kb on - strand, within ABID97_RS02785 at 569.087 kb on - strand, within ABID97_RS02785 at 569.579 kb on - strand, within ABID97_RS02785 at 569.662 kb on + strand at 569.662 kb on + strand at 569.662 kb on + strand at 569.662 kb on + strand at 569.662 kb on + strand at 569.663 kb on - strand at 569.938 kb on + strand at 569.975 kb on - strand at 570.002 kb on - strand at 570.002 kb on - strand at 570.121 kb on + strand, within ABID97_RS02790 at 570.121 kb on + strand, within ABID97_RS02790 at 570.121 kb on + strand, within ABID97_RS02790 at 570.122 kb on - strand, within ABID97_RS02790 at 570.143 kb on - strand, within ABID97_RS02790 at 570.143 kb on - strand, within ABID97_RS02790 at 570.271 kb on + strand, within ABID97_RS02790 at 570.271 kb on + strand, within ABID97_RS02790 at 570.278 kb on + strand, within ABID97_RS02790 at 570.335 kb on - strand, within ABID97_RS02790 at 570.349 kb on + strand, within ABID97_RS02790 at 570.350 kb on - strand, within ABID97_RS02790 at 570.517 kb on + strand, within ABID97_RS02790 at 570.517 kb on + strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.634 kb on + strand, within ABID97_RS02790 at 570.634 kb on + strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.664 kb on + strand, within ABID97_RS02790 at 570.688 kb on + strand, within ABID97_RS02790 at 570.688 kb on + strand, within ABID97_RS02790 at 570.688 kb on + strand, within ABID97_RS02790 at 570.689 kb on - strand, within ABID97_RS02790 at 570.745 kb on + strand, within ABID97_RS02790 at 570.745 kb on + strand, within ABID97_RS02790 at 570.745 kb on + strand, within ABID97_RS02790 at 570.775 kb on + strand, within ABID97_RS02790 at 570.776 kb on - strand, within ABID97_RS02790 at 571.589 kb on - strand, within ABID97_RS02790 at 571.762 kb on + strand, within ABID97_RS02790 at 571.877 kb on - strand, within ABID97_RS02790 at 571.948 kb on + strand at 571.949 kb on - strand at 572.029 kb on + strand at 572.029 kb on + strand at 572.182 kb on + strand at 572.241 kb on + strand at 572.241 kb on + strand at 572.241 kb on + strand at 572.242 kb on - strand at 572.330 kb on + strand at 572.330 kb on + strand at 572.331 kb on - strand at 572.393 kb on + strand, within ABID97_RS02795 at 572.393 kb on + strand, within ABID97_RS02795 at 572.393 kb on + strand, within ABID97_RS02795 at 572.393 kb on + strand, within ABID97_RS02795 at 572.394 kb on - strand, within ABID97_RS02795 at 572.394 kb on - strand, within ABID97_RS02795 at 572.432 kb on + strand, within ABID97_RS02795 at 572.600 kb on + strand, within ABID97_RS02795 at 572.825 kb on + strand, within ABID97_RS02795 at 572.871 kb on - strand at 572.871 kb on - strand at 572.871 kb on - strand at 573.066 kb on + strand, within ABID97_RS02800 at 573.097 kb on - strand, within ABID97_RS02800 at 573.097 kb on - strand, within ABID97_RS02800 at 573.097 kb on - strand, within ABID97_RS02800
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 569,087 - ABID97_RS02785 0.47 +0.7 569,087 - ABID97_RS02785 0.47 -0.5 569,087 - ABID97_RS02785 0.47 -0.1 569,579 - ABID97_RS02785 0.85 -0.5 569,662 + -1.9 569,662 + +0.1 569,662 + +0.0 569,662 + -0.1 569,662 + -0.1 569,663 - -0.0 569,938 + -1.9 569,975 - -0.0 570,002 - +1.3 570,002 - +1.4 570,121 + ABID97_RS02790 0.14 -1.1 570,121 + ABID97_RS02790 0.14 -0.7 570,121 + ABID97_RS02790 0.14 -2.1 570,122 - ABID97_RS02790 0.14 +0.6 570,143 - ABID97_RS02790 0.15 -0.8 570,143 - ABID97_RS02790 0.15 -0.6 570,271 + ABID97_RS02790 0.20 -0.5 570,271 + ABID97_RS02790 0.20 -0.5 570,278 + ABID97_RS02790 0.21 +0.0 570,335 - ABID97_RS02790 0.23 -0.7 570,349 + ABID97_RS02790 0.24 -0.6 570,350 - ABID97_RS02790 0.24 -0.8 570,517 + ABID97_RS02790 0.31 +2.2 570,517 + ABID97_RS02790 0.31 -0.1 570,518 - ABID97_RS02790 0.31 -0.5 570,518 - ABID97_RS02790 0.31 -0.6 570,518 - ABID97_RS02790 0.31 -1.2 570,518 - ABID97_RS02790 0.31 -0.4 570,518 - ABID97_RS02790 0.31 -0.6 570,518 - ABID97_RS02790 0.31 -0.2 570,518 - ABID97_RS02790 0.31 -0.1 570,518 - ABID97_RS02790 0.31 -0.2 570,634 + ABID97_RS02790 0.36 +0.2 570,634 + ABID97_RS02790 0.36 -0.5 570,635 - ABID97_RS02790 0.36 -0.9 570,635 - ABID97_RS02790 0.36 -0.6 570,635 - ABID97_RS02790 0.36 +0.7 570,635 - ABID97_RS02790 0.36 -0.4 570,664 + ABID97_RS02790 0.37 -0.0 570,688 + ABID97_RS02790 0.38 +0.7 570,688 + ABID97_RS02790 0.38 -1.6 570,688 + ABID97_RS02790 0.38 -0.1 570,689 - ABID97_RS02790 0.38 -1.0 570,745 + ABID97_RS02790 0.40 -0.2 570,745 + ABID97_RS02790 0.40 +0.2 570,745 + ABID97_RS02790 0.40 -1.2 570,775 + ABID97_RS02790 0.41 +0.0 570,776 - ABID97_RS02790 0.41 -0.7 571,589 - ABID97_RS02790 0.75 +0.2 571,762 + ABID97_RS02790 0.82 -0.2 571,877 - ABID97_RS02790 0.87 -0.2 571,948 + +0.2 571,949 - +0.3 572,029 + -0.1 572,029 + +2.7 572,182 + -0.0 572,241 + -0.2 572,241 + -0.2 572,241 + +0.5 572,242 - -0.6 572,330 + -0.1 572,330 + -0.4 572,331 - -1.1 572,393 + ABID97_RS02795 0.17 +0.4 572,393 + ABID97_RS02795 0.17 +0.1 572,393 + ABID97_RS02795 0.17 +0.0 572,393 + ABID97_RS02795 0.17 -0.2 572,394 - ABID97_RS02795 0.17 +0.8 572,394 - ABID97_RS02795 0.17 +0.2 572,432 + ABID97_RS02795 0.24 -0.2 572,600 + ABID97_RS02795 0.51 +0.1 572,825 + ABID97_RS02795 0.89 +0.5 572,871 - +0.8 572,871 - -0.2 572,871 - +1.1 573,066 + ABID97_RS02800 0.11 -0.9 573,097 - ABID97_RS02800 0.14 +0.0 573,097 - ABID97_RS02800 0.14 -0.3 573,097 - ABID97_RS02800 0.14 +1.7
Or see this region's nucleotide sequence