Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19775 and PS417_19780 overlap by 4 nucleotides PS417_19780 and PS417_19785 are separated by 65 nucleotides PS417_19785 and PS417_19790 are separated by 3 nucleotides PS417_19790 and PS417_19795 overlap by 11 nucleotides PS417_19795 and PS417_19800 are separated by 10 nucleotides
PS417_19775: PS417_19775 - chemotaxis protein CheY, at 4,293,786 to 4,295,504
_19775
PS417_19780: PS417_19780 - anti-anti-sigma factor, at 4,295,501 to 4,295,806
_19780
PS417_19785: PS417_19785 - flagellar biogenesis protein, at 4,295,872 to 4,296,321
_19785
PS417_19790: PS417_19790 - ATP synthase, at 4,296,325 to 4,297,683
_19790
PS417_19795: PS417_19795 - flagellar assembly protein FliH, at 4,297,673 to 4,298,437
_19795
PS417_19800: PS417_19800 - flagellar motor switch protein FliG, at 4,298,448 to 4,299,467
_19800
Position (kb) 4296
4297
4298 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4295.395 kb on - strand at 4295.566 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.677 kb on - strand, within PS417_19780 at 4295.694 kb on + strand, within PS417_19780 at 4295.707 kb on - strand, within PS417_19780 at 4295.845 kb on - strand at 4295.871 kb on - strand at 4295.871 kb on - strand at 4295.876 kb on + strand at 4295.876 kb on + strand at 4295.877 kb on - strand at 4295.964 kb on - strand, within PS417_19785 at 4295.964 kb on - strand, within PS417_19785 at 4296.170 kb on + strand, within PS417_19785 at 4296.237 kb on - strand, within PS417_19785 at 4296.414 kb on - strand at 4296.414 kb on - strand at 4296.552 kb on + strand, within PS417_19790 at 4296.553 kb on - strand, within PS417_19790 at 4296.605 kb on + strand, within PS417_19790 at 4296.729 kb on - strand, within PS417_19790 at 4296.729 kb on - strand at 4297.144 kb on - strand, within PS417_19790 at 4297.144 kb on - strand, within PS417_19790 at 4297.926 kb on + strand, within PS417_19795 at 4297.926 kb on + strand, within PS417_19795 at 4297.927 kb on - strand, within PS417_19795 at 4297.927 kb on - strand, within PS417_19795 at 4297.934 kb on + strand, within PS417_19795 at 4297.934 kb on + strand, within PS417_19795 at 4297.935 kb on - strand, within PS417_19795 at 4297.935 kb on - strand, within PS417_19795 at 4297.935 kb on - strand, within PS417_19795 at 4298.227 kb on - strand, within PS417_19795 at 4298.243 kb on - strand, within PS417_19795 at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.450 kb on - strand at 4298.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,295,395 - +0.3 4,295,566 + PS417_19780 0.21 -0.9 4,295,649 + PS417_19780 0.48 -1.2 4,295,649 + PS417_19780 0.48 +0.3 4,295,649 + PS417_19780 0.48 +0.8 4,295,650 - PS417_19780 0.49 +0.7 4,295,650 - PS417_19780 0.49 -0.1 4,295,650 - PS417_19780 0.49 -2.1 4,295,650 - PS417_19780 0.49 +0.2 4,295,650 - PS417_19780 0.49 -0.8 4,295,650 - PS417_19780 0.49 -1.2 4,295,677 - PS417_19780 0.58 -0.2 4,295,694 + PS417_19780 0.63 +0.1 4,295,707 - PS417_19780 0.67 -0.2 4,295,845 - +0.7 4,295,871 - -0.6 4,295,871 - -0.6 4,295,876 + -0.6 4,295,876 + +0.1 4,295,877 - -2.6 4,295,964 - PS417_19785 0.20 -4.8 4,295,964 - PS417_19785 0.20 -2.1 4,296,170 + PS417_19785 0.66 -4.5 4,296,237 - PS417_19785 0.81 -0.1 4,296,414 - -2.6 4,296,414 - -4.5 4,296,552 + PS417_19790 0.17 -3.2 4,296,553 - PS417_19790 0.17 -2.3 4,296,605 + PS417_19790 0.21 -0.4 4,296,729 - PS417_19790 0.30 -2.3 4,296,729 - -2.4 4,297,144 - PS417_19790 0.60 -1.1 4,297,144 - PS417_19790 0.60 -1.9 4,297,926 + PS417_19795 0.33 -3.3 4,297,926 + PS417_19795 0.33 -5.4 4,297,927 - PS417_19795 0.33 -3.0 4,297,927 - PS417_19795 0.33 -4.2 4,297,934 + PS417_19795 0.34 -2.5 4,297,934 + PS417_19795 0.34 -3.0 4,297,935 - PS417_19795 0.34 -4.6 4,297,935 - PS417_19795 0.34 -2.1 4,297,935 - PS417_19795 0.34 -5.0 4,298,227 - PS417_19795 0.72 -2.4 4,298,243 - PS417_19795 0.75 -1.1 4,298,449 + +0.9 4,298,449 + -4.0 4,298,449 + -3.6 4,298,449 + -0.7 4,298,449 + -3.2 4,298,450 - -2.8 4,298,450 - -1.0
Or see this region's nucleotide sequence