Strain Fitness in Escherichia coli BW25113 around b4230
Experiment: hexanol 0.31 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | hexanol 0.31 vol% |
---|---|---|---|---|---|
remove | |||||
4,449,705 | + | ytfR | b4485 | 0.42 | +1.2 |
4,449,718 | - | ytfR | b4485 | 0.42 | +0.5 |
4,449,953 | + | ytfR | b4485 | 0.58 | -2.3 |
4,449,953 | + | ytfR | b4485 | 0.58 | +0.3 |
4,450,019 | + | ytfR | b4485 | 0.62 | -0.6 |
4,450,080 | + | ytfR | b4485 | 0.66 | +0.4 |
4,450,088 | - | ytfR | b4485 | 0.67 | -0.1 |
4,450,167 | + | ytfR | b4485 | 0.72 | -1.9 |
4,450,175 | - | ytfR | b4485 | 0.73 | +0.3 |
4,450,267 | - | ytfR | b4485 | 0.79 | +0.2 |
4,450,268 | - | ytfR | b4485 | 0.79 | +0.2 |
4,450,406 | - | ytfR | b4485 | 0.88 | +0.2 |
4,450,406 | - | ytfR | b4485 | 0.88 | -1.3 |
4,450,451 | - | -0.6 | |||
4,450,478 | + | +0.6 | |||
4,450,478 | + | -0.1 | |||
4,450,592 | + | +0.7 | |||
4,450,666 | - | +0.7 | |||
4,450,668 | - | -1.4 | |||
4,450,675 | - | -0.1 | |||
4,450,702 | - | ytfT | b4230 | 0.11 | -0.5 |
4,450,708 | - | ytfT | b4230 | 0.11 | +0.8 |
4,450,716 | - | ytfT | b4230 | 0.12 | -0.9 |
4,450,755 | - | ytfT | b4230 | 0.16 | -1.4 |
4,450,755 | - | ytfT | b4230 | 0.16 | +0.8 |
4,450,760 | - | ytfT | b4230 | 0.16 | +0.9 |
4,450,765 | - | ytfT | b4230 | 0.17 | -0.7 |
4,450,765 | - | ytfT | b4230 | 0.17 | -1.4 |
4,450,826 | - | ytfT | b4230 | 0.23 | -0.5 |
4,450,832 | + | ytfT | b4230 | 0.23 | +0.1 |
4,450,843 | - | ytfT | b4230 | 0.24 | -0.0 |
4,450,853 | - | ytfT | b4230 | 0.25 | -0.5 |
4,450,858 | + | ytfT | b4230 | 0.26 | -0.1 |
4,450,865 | - | ytfT | b4230 | 0.26 | -0.7 |
4,450,865 | - | ytfT | b4230 | 0.26 | -0.0 |
4,451,166 | + | ytfT | b4230 | 0.56 | +1.2 |
4,451,218 | + | ytfT | b4230 | 0.61 | +0.0 |
4,451,218 | + | ytfT | b4230 | 0.61 | -1.7 |
4,451,226 | - | ytfT | b4230 | 0.62 | +0.1 |
4,451,287 | - | ytfT | b4230 | 0.68 | +0.1 |
4,451,298 | + | ytfT | b4230 | 0.69 | -1.0 |
4,451,302 | - | ytfT | b4230 | 0.69 | -0.5 |
4,451,302 | - | ytfT | b4230 | 0.69 | -0.6 |
4,451,360 | + | ytfT | b4230 | 0.75 | -1.8 |
4,451,473 | + | ytfT | b4230 | 0.86 | -0.9 |
4,451,586 | + | -0.6 | |||
4,451,586 | + | -1.3 | |||
4,451,598 | + | +0.3 | |||
4,451,598 | + | -0.3 | |||
4,451,606 | - | +0.0 | |||
4,451,646 | + | -0.2 | |||
4,451,775 | + | yjfF | b4231 | 0.17 | +0.8 |
4,451,775 | + | yjfF | b4231 | 0.17 | +1.0 |
4,451,791 | - | yjfF | b4231 | 0.19 | +0.4 |
4,451,830 | - | yjfF | b4231 | 0.22 | -1.9 |
4,451,830 | - | yjfF | b4231 | 0.22 | -0.4 |
4,451,944 | - | yjfF | b4231 | 0.34 | -1.4 |
4,452,005 | - | yjfF | b4231 | 0.40 | -2.7 |
4,452,005 | - | yjfF | b4231 | 0.40 | +1.2 |
4,452,046 | - | yjfF | b4231 | 0.44 | +1.0 |
4,452,046 | - | yjfF | b4231 | 0.44 | -0.6 |
4,452,131 | + | yjfF | b4231 | 0.53 | +0.6 |
4,452,132 | + | yjfF | b4231 | 0.53 | +0.3 |
4,452,169 | + | yjfF | b4231 | 0.57 | -0.0 |
4,452,169 | + | yjfF | b4231 | 0.57 | -0.9 |
4,452,187 | - | yjfF | b4231 | 0.58 | +0.3 |
4,452,307 | - | yjfF | b4231 | 0.70 | -0.8 |
4,452,398 | + | yjfF | b4231 | 0.80 | +0.9 |
4,452,406 | - | yjfF | b4231 | 0.80 | +0.9 |
4,452,406 | - | yjfF | b4231 | 0.80 | +0.4 |
4,452,442 | + | yjfF | b4231 | 0.84 | +0.1 |
4,452,471 | + | yjfF | b4231 | 0.87 | +0.6 |
4,452,555 | - | -0.6 |
Or see this region's nucleotide sequence