Strain Fitness in Escherichia coli BW25113 around b2154

Experiment: hexanol 0.31 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiB and folE are separated by 16 nucleotidesfolE and yeiG are separated by 257 nucleotidesyeiG and cirA are separated by 31 nucleotides b2152: yeiB - conserved inner membrane protein (NCBI), at 2,239,832 to 2,240,989 yeiB b2153: folE - GTP cyclohydrolase I (NCBI), at 2,241,006 to 2,241,674 folE b2154: yeiG - predicted esterase (NCBI), at 2,241,932 to 2,242,768 yeiG b2155: cirA - ferric iron-catecholate outer membrane transporter (NCBI), at 2,242,800 to 2,244,791 cirA Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -3 -2 -1 0 1at 2241.735 kb on + strandat 2241.778 kb on - strandat 2241.778 kb on - strandat 2241.884 kb on - strandat 2241.884 kb on - strandat 2242.006 kb on - strandat 2242.045 kb on + strand, within yeiGat 2242.062 kb on - strand, within yeiGat 2242.062 kb on - strand, within yeiGat 2242.149 kb on + strand, within yeiGat 2242.453 kb on + strand, within yeiGat 2242.453 kb on + strand, within yeiGat 2242.456 kb on - strand, within yeiGat 2242.504 kb on + strand, within yeiGat 2242.626 kb on - strand, within yeiGat 2242.719 kb on + strandat 2242.719 kb on + strandat 2242.753 kb on + strandat 2242.761 kb on - strandat 2242.761 kb on - strandat 2242.890 kb on + strandat 2242.898 kb on - strandat 2242.921 kb on + strandat 2242.921 kb on + strandat 2242.942 kb on + strandat 2242.967 kb on + strandat 2243.005 kb on + strand, within cirAat 2243.005 kb on + strand, within cirAat 2243.143 kb on - strand, within cirAat 2243.202 kb on - strand, within cirAat 2243.202 kb on - strand, within cirAat 2243.243 kb on - strand, within cirAat 2243.295 kb on + strand, within cirAat 2243.417 kb on - strand, within cirAat 2243.417 kb on - strand, within cirAat 2243.561 kb on - strand, within cirAat 2243.603 kb on - strand, within cirAat 2243.616 kb on - strand, within cirAat 2243.616 kb on - strand, within cirA

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Per-strain Table

Position Strand Gene LocusTag Fraction hexanol 0.31 vol%
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2,241,735 + -1.6
2,241,778 - +1.0
2,241,778 - -0.7
2,241,884 - -0.9
2,241,884 - +0.4
2,242,006 - +0.0
2,242,045 + yeiG b2154 0.14 +0.8
2,242,062 - yeiG b2154 0.16 -0.9
2,242,062 - yeiG b2154 0.16 +0.1
2,242,149 + yeiG b2154 0.26 -0.5
2,242,453 + yeiG b2154 0.62 -0.3
2,242,453 + yeiG b2154 0.62 -1.0
2,242,456 - yeiG b2154 0.63 +0.0
2,242,504 + yeiG b2154 0.68 +0.0
2,242,626 - yeiG b2154 0.83 +0.5
2,242,719 + -0.8
2,242,719 + +0.4
2,242,753 + +1.3
2,242,761 - +0.0
2,242,761 - -3.1
2,242,890 + +0.3
2,242,898 - +0.2
2,242,921 + -0.7
2,242,921 + -0.8
2,242,942 + +0.1
2,242,967 + +0.5
2,243,005 + cirA b2155 0.10 -1.1
2,243,005 + cirA b2155 0.10 +0.4
2,243,143 - cirA b2155 0.17 +0.4
2,243,202 - cirA b2155 0.20 -0.2
2,243,202 - cirA b2155 0.20 -0.5
2,243,243 - cirA b2155 0.22 -1.2
2,243,295 + cirA b2155 0.25 +0.3
2,243,417 - cirA b2155 0.31 -1.0
2,243,417 - cirA b2155 0.31 +1.6
2,243,561 - cirA b2155 0.38 -0.4
2,243,603 - cirA b2155 0.40 +1.7
2,243,616 - cirA b2155 0.41 +0.6
2,243,616 - cirA b2155 0.41 -1.4

Or see this region's nucleotide sequence