Strain Fitness in Escherichia coli BW25113 around b1584
Experiment: hexanol 0.31 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | hexanol 0.31 vol% |
---|---|---|---|---|---|
remove | |||||
1,653,461 | + | ynfA | b1582 | 0.28 | -0.6 |
1,653,557 | - | ynfA | b1582 | 0.57 | -0.3 |
1,653,632 | + | ynfA | b1582 | 0.80 | +0.2 |
1,653,757 | + | -0.3 | |||
1,653,792 | + | -2.5 | |||
1,653,800 | - | +1.1 | |||
1,653,869 | + | ynfB | b1583 | 0.11 | +1.4 |
1,653,869 | + | +0.9 | |||
1,653,881 | + | ynfB | b1583 | 0.14 | -0.7 |
1,654,127 | - | ynfB | b1583 | 0.86 | -0.1 |
1,654,136 | + | ynfB | b1583 | 0.89 | +0.1 |
1,654,144 | - | +1.1 | |||
1,654,144 | - | +0.4 | |||
1,654,204 | + | +0.1 | |||
1,654,204 | + | +0.0 | |||
1,654,205 | - | +1.2 | |||
1,654,224 | + | -0.3 | |||
1,654,263 | + | +0.6 | |||
1,654,299 | - | speG | b1584 | 0.16 | +1.1 |
1,654,339 | + | speG | b1584 | 0.23 | -0.6 |
1,654,362 | + | speG | b1584 | 0.27 | +1.1 |
1,654,391 | - | speG | b1584 | 0.33 | +0.3 |
1,654,394 | + | speG | b1584 | 0.33 | +0.0 |
1,654,394 | + | speG | b1584 | 0.33 | +0.1 |
1,654,420 | + | speG | b1584 | 0.38 | -1.7 |
1,654,486 | + | speG | b1584 | 0.50 | -0.1 |
1,654,486 | + | speG | b1584 | 0.50 | +1.7 |
1,654,499 | + | speG | b1584 | 0.52 | +1.2 |
1,654,532 | + | speG | b1584 | 0.58 | -0.9 |
1,654,532 | + | speG | b1584 | 0.58 | +1.4 |
1,654,534 | - | speG | b1584 | 0.58 | +1.1 |
1,654,534 | - | speG | b1584 | 0.58 | +0.1 |
1,654,537 | + | speG | b1584 | 0.59 | +0.3 |
1,654,537 | + | speG | b1584 | 0.59 | -1.4 |
1,654,539 | + | speG | b1584 | 0.59 | +0.3 |
1,654,539 | + | speG | b1584 | 0.59 | -0.2 |
1,654,563 | + | speG | b1584 | 0.63 | +0.2 |
1,654,563 | + | speG | b1584 | 0.63 | +0.3 |
1,654,564 | + | speG | b1584 | 0.63 | +0.3 |
1,654,578 | + | speG | b1584 | 0.66 | +0.0 |
1,654,690 | + | speG | b1584 | 0.86 | -0.2 |
1,654,690 | + | speG | b1584 | 0.86 | -2.0 |
1,654,711 | + | speG | b1584 | 0.90 | -1.1 |
1,654,711 | + | speG | b1584 | 0.90 | +1.3 |
1,654,719 | - | -0.4 | |||
1,654,723 | + | +0.1 | |||
1,654,723 | + | +0.3 | |||
1,654,731 | - | -0.3 | |||
1,654,745 | + | +1.5 | |||
1,654,745 | + | -0.2 | |||
1,654,753 | - | -0.3 | |||
1,654,799 | + | -0.2 | |||
1,654,807 | - | +1.5 | |||
1,654,807 | - | +0.1 | |||
1,654,812 | - | -1.6 | |||
1,654,812 | - | +0.5 | |||
1,655,022 | - | ynfC | b1585 | 0.35 | -0.5 |
1,655,058 | + | ynfC | b1585 | 0.40 | -1.2 |
1,655,077 | - | ynfC | b1585 | 0.43 | -0.9 |
1,655,077 | - | ynfC | b1585 | 0.43 | -0.1 |
1,655,102 | + | ynfC | b1585 | 0.47 | -0.4 |
1,655,114 | + | ynfC | b1585 | 0.48 | +0.6 |
1,655,123 | - | ynfC | b1585 | 0.50 | -0.4 |
1,655,123 | - | ynfC | b1585 | 0.50 | +0.6 |
1,655,147 | - | ynfC | b1585 | 0.53 | -0.2 |
1,655,175 | - | ynfC | b1585 | 0.57 | +1.0 |
1,655,199 | - | ynfC | b1585 | 0.60 | -0.4 |
1,655,208 | + | ynfC | b1585 | 0.61 | -0.0 |
1,655,216 | - | ynfC | b1585 | 0.63 | +0.8 |
1,655,394 | + | ynfC | b1585 | 0.88 | +0.7 |
1,655,402 | - | +1.3 | |||
1,655,402 | - | ynfC | b1585 | 0.89 | -0.1 |
1,655,413 | - | -0.6 | |||
1,655,428 | + | +0.4 | |||
1,655,500 | - | +0.8 | |||
1,655,500 | - | +0.7 | |||
1,655,626 | + | b1586 | b1586 | 0.12 | +1.2 |
1,655,634 | - | b1586 | b1586 | 0.15 | +1.1 |
1,655,643 | + | b1586 | b1586 | 0.18 | +0.5 |
1,655,645 | + | b1586 | b1586 | 0.18 | +0.9 |
1,655,655 | + | b1586 | b1586 | 0.22 | -1.7 |
1,655,655 | + | b1586 | b1586 | 0.22 | +0.6 |
Or see this region's nucleotide sequence