Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS18585

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS18580 and UW163_RS18585 are separated by 77 nucleotidesUW163_RS18585 and UW163_RS18590 are separated by 261 nucleotidesUW163_RS18590 and UW163_RS18595 are separated by 30 nucleotides UW163_RS18580: UW163_RS18580 - alkene reductase, at 573,976 to 575,085 _RS18580 UW163_RS18585: UW163_RS18585 - epimerase, at 575,163 to 575,813 _RS18585 UW163_RS18590: UW163_RS18590 - DUF2784 domain-containing protein, at 576,075 to 576,443 _RS18590 UW163_RS18595: UW163_RS18595 - transcriptional regulator, at 576,474 to 576,905 _RS18595 Position (kb) 575 576Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 574.247 kb on + strand, within UW163_RS18580at 574.247 kb on + strand, within UW163_RS18580at 574.248 kb on - strand, within UW163_RS18580at 574.248 kb on - strand, within UW163_RS18580at 574.403 kb on - strand, within UW163_RS18580at 574.456 kb on + strand, within UW163_RS18580at 574.525 kb on + strand, within UW163_RS18580at 574.525 kb on + strand, within UW163_RS18580at 574.572 kb on + strand, within UW163_RS18580at 574.573 kb on - strand, within UW163_RS18580at 574.573 kb on - strand, within UW163_RS18580at 574.573 kb on - strand, within UW163_RS18580at 574.573 kb on - strand, within UW163_RS18580at 574.576 kb on + strand, within UW163_RS18580at 574.576 kb on + strand, within UW163_RS18580at 574.576 kb on + strand, within UW163_RS18580at 574.577 kb on - strand, within UW163_RS18580at 574.577 kb on - strand, within UW163_RS18580at 574.577 kb on - strand, within UW163_RS18580at 574.577 kb on - strand, within UW163_RS18580at 574.687 kb on + strand, within UW163_RS18580at 574.687 kb on + strand, within UW163_RS18580at 574.687 kb on + strand, within UW163_RS18580at 574.687 kb on + strand, within UW163_RS18580at 574.687 kb on + strand, within UW163_RS18580at 574.687 kb on + strand, within UW163_RS18580at 574.688 kb on - strand, within UW163_RS18580at 574.723 kb on + strand, within UW163_RS18580at 574.729 kb on + strand, within UW163_RS18580at 574.730 kb on - strand, within UW163_RS18580at 574.754 kb on + strand, within UW163_RS18580at 574.766 kb on - strand, within UW163_RS18580at 574.766 kb on - strand, within UW163_RS18580at 574.835 kb on + strand, within UW163_RS18580at 574.835 kb on + strand, within UW163_RS18580at 574.835 kb on + strandat 574.835 kb on + strand, within UW163_RS18580at 574.835 kb on + strand, within UW163_RS18580at 574.835 kb on + strand, within UW163_RS18580at 574.835 kb on + strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.836 kb on - strand, within UW163_RS18580at 574.948 kb on - strand, within UW163_RS18580at 574.965 kb on - strand, within UW163_RS18580at 574.965 kb on - strand, within UW163_RS18580at 575.020 kb on + strandat 575.020 kb on + strandat 575.020 kb on + strandat 575.021 kb on - strandat 575.021 kb on - strandat 575.021 kb on - strandat 575.021 kb on - strandat 575.021 kb on - strandat 575.041 kb on + strandat 575.042 kb on - strandat 575.042 kb on - strandat 575.042 kb on - strandat 575.155 kb on + strandat 575.155 kb on + strandat 575.155 kb on + strandat 575.155 kb on + strandat 575.155 kb on + strandat 575.155 kb on + strandat 575.156 kb on - strandat 575.156 kb on - strandat 575.156 kb on - strandat 575.162 kb on + strandat 575.163 kb on - strandat 575.163 kb on - strandat 575.180 kb on - strandat 575.180 kb on - strandat 575.409 kb on + strand, within UW163_RS18585at 575.409 kb on + strand, within UW163_RS18585at 575.410 kb on - strand, within UW163_RS18585at 575.582 kb on + strand, within UW163_RS18585at 575.583 kb on - strand, within UW163_RS18585at 575.583 kb on - strand, within UW163_RS18585at 575.583 kb on - strand, within UW163_RS18585at 575.628 kb on + strand, within UW163_RS18585at 575.628 kb on + strand, within UW163_RS18585at 575.628 kb on + strand, within UW163_RS18585at 575.629 kb on - strand, within UW163_RS18585at 575.629 kb on - strand, within UW163_RS18585at 575.629 kb on - strand, within UW163_RS18585at 575.629 kb on - strand, within UW163_RS18585at 575.629 kb on - strand, within UW163_RS18585at 575.743 kb on - strand, within UW163_RS18585at 575.743 kb on - strand, within UW163_RS18585at 575.743 kb on - strand, within UW163_RS18585at 575.812 kb on - strandat 575.812 kb on - strandat 575.862 kb on + strandat 576.133 kb on + strand, within UW163_RS18590at 576.134 kb on - strand, within UW163_RS18590at 576.166 kb on + strand, within UW163_RS18590at 576.166 kb on + strand, within UW163_RS18590at 576.166 kb on + strand, within UW163_RS18590at 576.167 kb on - strand, within UW163_RS18590at 576.167 kb on - strand, within UW163_RS18590at 576.167 kb on - strand, within UW163_RS18590at 576.169 kb on + strand, within UW163_RS18590at 576.169 kb on + strand, within UW163_RS18590at 576.169 kb on + strand, within UW163_RS18590at 576.170 kb on - strand, within UW163_RS18590at 576.799 kb on + strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595at 576.800 kb on - strand, within UW163_RS18595

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
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574,247 + UW163_RS18580 0.24 +0.5
574,247 + UW163_RS18580 0.24 +1.3
574,248 - UW163_RS18580 0.25 +0.3
574,248 - UW163_RS18580 0.25 -2.6
574,403 - UW163_RS18580 0.38 -1.1
574,456 + UW163_RS18580 0.43 +2.3
574,525 + UW163_RS18580 0.49 +0.3
574,525 + UW163_RS18580 0.49 +1.3
574,572 + UW163_RS18580 0.54 -0.1
574,573 - UW163_RS18580 0.54 -2.3
574,573 - UW163_RS18580 0.54 -0.8
574,573 - UW163_RS18580 0.54 -0.2
574,573 - UW163_RS18580 0.54 -0.3
574,576 + UW163_RS18580 0.54 +0.3
574,576 + UW163_RS18580 0.54 -0.1
574,576 + UW163_RS18580 0.54 +2.3
574,577 - UW163_RS18580 0.54 -0.8
574,577 - UW163_RS18580 0.54 -2.3
574,577 - UW163_RS18580 0.54 -0.7
574,577 - UW163_RS18580 0.54 +2.3
574,687 + UW163_RS18580 0.64 -0.4
574,687 + UW163_RS18580 0.64 -1.9
574,687 + UW163_RS18580 0.64 +0.2
574,687 + UW163_RS18580 0.64 +0.6
574,687 + UW163_RS18580 0.64 +2.3
574,687 + UW163_RS18580 0.64 -0.4
574,688 - UW163_RS18580 0.64 -1.3
574,723 + UW163_RS18580 0.67 -0.1
574,729 + UW163_RS18580 0.68 +2.3
574,730 - UW163_RS18580 0.68 -0.6
574,754 + UW163_RS18580 0.70 +0.2
574,766 - UW163_RS18580 0.71 -1.9
574,766 - UW163_RS18580 0.71 +1.4
574,835 + UW163_RS18580 0.77 +2.3
574,835 + UW163_RS18580 0.77 -0.6
574,835 + +2.3
574,835 + UW163_RS18580 0.77 +0.3
574,835 + UW163_RS18580 0.77 -0.3
574,835 + UW163_RS18580 0.77 +0.0
574,835 + UW163_RS18580 0.77 +2.3
574,836 - UW163_RS18580 0.77 +0.1
574,836 - UW163_RS18580 0.77 -1.3
574,836 - UW163_RS18580 0.77 +0.7
574,836 - UW163_RS18580 0.77 -3.0
574,836 - UW163_RS18580 0.77 -0.8
574,836 - UW163_RS18580 0.77 -0.3
574,836 - UW163_RS18580 0.77 -1.6
574,836 - UW163_RS18580 0.77 -0.9
574,948 - UW163_RS18580 0.88 -1.3
574,965 - UW163_RS18580 0.89 -0.3
574,965 - UW163_RS18580 0.89 +0.2
575,020 + -0.8
575,020 + -0.1
575,020 + -0.7
575,021 - +0.4
575,021 - -0.1
575,021 - -0.4
575,021 - +0.3
575,021 - +0.6
575,041 + -0.3
575,042 - +0.9
575,042 - +2.3
575,042 - +2.3
575,155 + -0.1
575,155 + +2.3
575,155 + -1.5
575,155 + -0.1
575,155 + +2.0
575,155 + +0.3
575,156 - -1.5
575,156 - +0.4
575,156 - -1.0
575,162 + +0.3
575,163 - +0.3
575,163 - -0.5
575,180 - -1.5
575,180 - -0.8
575,409 + UW163_RS18585 0.38 -0.6
575,409 + UW163_RS18585 0.38 -0.2
575,410 - UW163_RS18585 0.38 +0.3
575,582 + UW163_RS18585 0.64 -0.6
575,583 - UW163_RS18585 0.65 -0.5
575,583 - UW163_RS18585 0.65 -1.8
575,583 - UW163_RS18585 0.65 -0.8
575,628 + UW163_RS18585 0.71 +0.7
575,628 + UW163_RS18585 0.71 -1.2
575,628 + UW163_RS18585 0.71 +0.1
575,629 - UW163_RS18585 0.72 +2.3
575,629 - UW163_RS18585 0.72 +0.3
575,629 - UW163_RS18585 0.72 -0.8
575,629 - UW163_RS18585 0.72 +1.7
575,629 - UW163_RS18585 0.72 +1.3
575,743 - UW163_RS18585 0.89 +0.7
575,743 - UW163_RS18585 0.89 -0.5
575,743 - UW163_RS18585 0.89 +0.1
575,812 - +0.5
575,812 - -0.2
575,862 + +2.3
576,133 + UW163_RS18590 0.16 -0.0
576,134 - UW163_RS18590 0.16 -1.1
576,166 + UW163_RS18590 0.25 +2.3
576,166 + UW163_RS18590 0.25 -0.5
576,166 + UW163_RS18590 0.25 -0.5
576,167 - UW163_RS18590 0.25 -1.2
576,167 - UW163_RS18590 0.25 -0.5
576,167 - UW163_RS18590 0.25 -0.1
576,169 + UW163_RS18590 0.25 +1.5
576,169 + UW163_RS18590 0.25 +0.7
576,169 + UW163_RS18590 0.25 +0.1
576,170 - UW163_RS18590 0.26 -0.5
576,799 + UW163_RS18595 0.75 +0.8
576,800 - UW163_RS18595 0.75 -0.1
576,800 - UW163_RS18595 0.75 -1.3
576,800 - UW163_RS18595 0.75 -0.9
576,800 - UW163_RS18595 0.75 +0.6

Or see this region's nucleotide sequence