Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS18035

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS18030 and UW163_RS18035 are separated by 119 nucleotidesUW163_RS18035 and UW163_RS18040 overlap by 11 nucleotidesUW163_RS18040 and UW163_RS18045 are separated by 57 nucleotides UW163_RS18030: UW163_RS18030 - ABC transporter substrate-binding protein, at 441,322 to 442,362 _RS18030 UW163_RS18035: UW163_RS18035 - ABC transporter permease, at 442,482 to 443,378 _RS18035 UW163_RS18040: UW163_RS18040 - ABC transporter ATP-binding protein, at 443,368 to 444,153 _RS18040 UW163_RS18045: UW163_RS18045 - GntR family transcriptional regulator, at 444,211 to 444,933 _RS18045 Position (kb) 442 443 444Strain fitness (log2 ratio) -2 -1 0 1 2 3at 441.522 kb on - strand, within UW163_RS18030at 441.522 kb on - strand, within UW163_RS18030at 441.522 kb on - strand, within UW163_RS18030at 441.522 kb on - strand, within UW163_RS18030at 441.618 kb on - strand, within UW163_RS18030at 441.635 kb on + strand, within UW163_RS18030at 441.635 kb on + strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.664 kb on + strand, within UW163_RS18030at 441.716 kb on + strand, within UW163_RS18030at 441.717 kb on - strand, within UW163_RS18030at 441.772 kb on + strand, within UW163_RS18030at 441.827 kb on + strand, within UW163_RS18030at 441.827 kb on + strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.968 kb on + strand, within UW163_RS18030at 441.968 kb on + strandat 441.969 kb on - strand, within UW163_RS18030at 442.621 kb on + strand, within UW163_RS18035at 442.621 kb on + strand, within UW163_RS18035at 442.621 kb on + strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.628 kb on - strand, within UW163_RS18035at 442.628 kb on - strand, within UW163_RS18035at 442.768 kb on + strand, within UW163_RS18035at 442.768 kb on + strand, within UW163_RS18035at 442.768 kb on + strand, within UW163_RS18035at 442.769 kb on - strand, within UW163_RS18035at 442.789 kb on + strand, within UW163_RS18035at 442.872 kb on - strand, within UW163_RS18035at 443.054 kb on - strand, within UW163_RS18035at 443.780 kb on + strand, within UW163_RS18040at 443.781 kb on - strand, within UW163_RS18040at 443.781 kb on - strand, within UW163_RS18040at 443.781 kb on - strand, within UW163_RS18040at 443.973 kb on - strand, within UW163_RS18040at 444.047 kb on + strand, within UW163_RS18040at 444.048 kb on - strand, within UW163_RS18040at 444.048 kb on - strand, within UW163_RS18040at 444.068 kb on + strand, within UW163_RS18040at 444.068 kb on + strand, within UW163_RS18040at 444.069 kb on - strand, within UW163_RS18040at 444.069 kb on - strand, within UW163_RS18040at 444.069 kb on - strand, within UW163_RS18040at 444.101 kb on + strandat 444.101 kb on + strandat 444.101 kb on + strandat 444.101 kb on + strandat 444.102 kb on - strandat 444.102 kb on - strandat 444.102 kb on - strandat 444.102 kb on - strandat 444.102 kb on - strandat 444.354 kb on - strand, within UW163_RS18045at 444.354 kb on - strand, within UW163_RS18045at 444.354 kb on - strand, within UW163_RS18045at 444.354 kb on - strand, within UW163_RS18045

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
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441,522 - UW163_RS18030 0.19 -0.3
441,522 - UW163_RS18030 0.19 +1.4
441,522 - UW163_RS18030 0.19 -0.7
441,522 - UW163_RS18030 0.19 -0.8
441,618 - UW163_RS18030 0.28 +3.1
441,635 + UW163_RS18030 0.30 -1.1
441,635 + UW163_RS18030 0.30 -0.4
441,636 - UW163_RS18030 0.30 -2.5
441,636 - UW163_RS18030 0.30 +2.4
441,636 - UW163_RS18030 0.30 -0.8
441,636 - UW163_RS18030 0.30 -0.7
441,636 - UW163_RS18030 0.30 +0.4
441,636 - UW163_RS18030 0.30 +0.8
441,664 + UW163_RS18030 0.33 +0.0
441,716 + UW163_RS18030 0.38 -0.1
441,717 - UW163_RS18030 0.38 +0.5
441,772 + UW163_RS18030 0.43 +0.8
441,827 + UW163_RS18030 0.49 -0.5
441,827 + UW163_RS18030 0.49 +0.8
441,828 - UW163_RS18030 0.49 -1.6
441,828 - UW163_RS18030 0.49 +0.3
441,828 - UW163_RS18030 0.49 -1.5
441,828 - UW163_RS18030 0.49 -1.2
441,968 + UW163_RS18030 0.62 +0.0
441,968 + +0.0
441,969 - UW163_RS18030 0.62 -1.0
442,621 + UW163_RS18035 0.15 +1.1
442,621 + UW163_RS18035 0.15 -0.4
442,621 + UW163_RS18035 0.15 +2.3
442,622 - UW163_RS18035 0.16 +0.2
442,622 - UW163_RS18035 0.16 -1.0
442,622 - UW163_RS18035 0.16 +2.3
442,622 - UW163_RS18035 0.16 -2.1
442,622 - UW163_RS18035 0.16 +1.3
442,622 - UW163_RS18035 0.16 +0.2
442,627 + UW163_RS18035 0.16 -1.0
442,627 + UW163_RS18035 0.16 -2.0
442,627 + UW163_RS18035 0.16 +2.3
442,627 + UW163_RS18035 0.16 -1.0
442,627 + UW163_RS18035 0.16 -1.2
442,627 + UW163_RS18035 0.16 +2.3
442,628 - UW163_RS18035 0.16 +0.2
442,628 - UW163_RS18035 0.16 +1.8
442,768 + UW163_RS18035 0.32 +2.3
442,768 + UW163_RS18035 0.32 -0.7
442,768 + UW163_RS18035 0.32 +2.3
442,769 - UW163_RS18035 0.32 +1.3
442,789 + UW163_RS18035 0.34 -0.6
442,872 - UW163_RS18035 0.43 -0.5
443,054 - UW163_RS18035 0.64 -2.6
443,780 + UW163_RS18040 0.52 +0.3
443,781 - UW163_RS18040 0.53 +2.3
443,781 - UW163_RS18040 0.53 +0.0
443,781 - UW163_RS18040 0.53 +0.1
443,973 - UW163_RS18040 0.77 +0.3
444,047 + UW163_RS18040 0.86 -2.0
444,048 - UW163_RS18040 0.87 -1.0
444,048 - UW163_RS18040 0.87 +2.3
444,068 + UW163_RS18040 0.89 +0.1
444,068 + UW163_RS18040 0.89 +2.3
444,069 - UW163_RS18040 0.89 +2.3
444,069 - UW163_RS18040 0.89 +1.3
444,069 - UW163_RS18040 0.89 -0.0
444,101 + -1.4
444,101 + -1.0
444,101 + -1.1
444,101 + +0.0
444,102 - -0.1
444,102 - +1.0
444,102 - -1.2
444,102 - -0.5
444,102 - -1.1
444,354 - UW163_RS18045 0.20 +0.0
444,354 - UW163_RS18045 0.20 +2.4
444,354 - UW163_RS18045 0.20 +1.4
444,354 - UW163_RS18045 0.20 -0.8

Or see this region's nucleotide sequence