Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS16495

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS16490 and UW163_RS16495 are separated by 247 nucleotidesUW163_RS16495 and UW163_RS16500 are separated by 294 nucleotides UW163_RS16490: UW163_RS16490 - UTP--glucose-1-phosphate uridylyltransferase, at 65,158 to 66,117 _RS16490 UW163_RS16495: UW163_RS16495 - DNA-binding protein, at 66,365 to 67,192 _RS16495 UW163_RS16500: UW163_RS16500 - chromosome partitioning protein ParB, at 67,487 to 68,491 _RS16500 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.491 kb on - strand, within UW163_RS16490at 65.491 kb on - strand, within UW163_RS16490at 65.492 kb on + strand, within UW163_RS16490at 65.492 kb on + strand, within UW163_RS16490at 65.492 kb on + strand, within UW163_RS16490at 65.492 kb on + strand, within UW163_RS16490at 65.493 kb on - strand, within UW163_RS16490at 65.493 kb on - strand, within UW163_RS16490at 65.666 kb on + strand, within UW163_RS16490at 65.666 kb on + strand, within UW163_RS16490at 65.667 kb on - strand, within UW163_RS16490at 65.667 kb on - strand, within UW163_RS16490at 65.667 kb on - strand, within UW163_RS16490at 65.667 kb on - strand, within UW163_RS16490at 65.667 kb on - strand, within UW163_RS16490at 65.749 kb on + strand, within UW163_RS16490at 65.810 kb on + strand, within UW163_RS16490at 65.810 kb on + strand, within UW163_RS16490at 65.810 kb on + strand, within UW163_RS16490at 65.810 kb on + strand, within UW163_RS16490at 65.811 kb on - strand, within UW163_RS16490at 65.811 kb on - strand, within UW163_RS16490at 65.811 kb on - strand, within UW163_RS16490at 65.811 kb on - strand, within UW163_RS16490at 65.811 kb on - strand, within UW163_RS16490at 65.811 kb on - strand, within UW163_RS16490at 65.901 kb on - strand, within UW163_RS16490at 65.901 kb on - strand, within UW163_RS16490at 65.996 kb on + strand, within UW163_RS16490at 65.997 kb on - strand, within UW163_RS16490at 66.239 kb on + strandat 66.239 kb on + strandat 66.239 kb on + strandat 66.240 kb on - strandat 66.240 kb on - strandat 66.366 kb on + strandat 66.367 kb on - strandat 66.572 kb on - strandat 66.572 kb on - strand, within UW163_RS16495at 67.044 kb on + strand, within UW163_RS16495at 67.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
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65,491 - UW163_RS16490 0.35 -1.0
65,491 - UW163_RS16490 0.35 -1.2
65,492 + UW163_RS16490 0.35 +1.4
65,492 + UW163_RS16490 0.35 +2.4
65,492 + UW163_RS16490 0.35 +0.4
65,492 + UW163_RS16490 0.35 -0.8
65,493 - UW163_RS16490 0.35 +2.4
65,493 - UW163_RS16490 0.35 -1.5
65,666 + UW163_RS16490 0.53 +2.4
65,666 + UW163_RS16490 0.53 +0.6
65,667 - UW163_RS16490 0.53 +0.6
65,667 - UW163_RS16490 0.53 -1.3
65,667 - UW163_RS16490 0.53 -0.2
65,667 - UW163_RS16490 0.53 +1.4
65,667 - UW163_RS16490 0.53 -1.5
65,749 + UW163_RS16490 0.62 -0.7
65,810 + UW163_RS16490 0.68 +0.8
65,810 + UW163_RS16490 0.68 +0.1
65,810 + UW163_RS16490 0.68 -1.9
65,810 + UW163_RS16490 0.68 +0.1
65,811 - UW163_RS16490 0.68 -0.2
65,811 - UW163_RS16490 0.68 -1.5
65,811 - UW163_RS16490 0.68 +2.4
65,811 - UW163_RS16490 0.68 -0.3
65,811 - UW163_RS16490 0.68 -1.5
65,811 - UW163_RS16490 0.68 -0.8
65,901 - UW163_RS16490 0.77 +2.4
65,901 - UW163_RS16490 0.77 -3.2
65,996 + UW163_RS16490 0.87 -0.4
65,997 - UW163_RS16490 0.87 -2.1
66,239 + +1.4
66,239 + +2.4
66,239 + +0.4
66,240 - -0.9
66,240 - -1.7
66,366 + +2.4
66,367 - +0.8
66,572 - +2.4
66,572 - UW163_RS16495 0.25 -1.4
67,044 + UW163_RS16495 0.82 +2.4
67,489 - -0.1

Or see this region's nucleotide sequence