Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS13125

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS13120 and UW163_RS13125 are separated by 87 nucleotidesUW163_RS13125 and UW163_RS13130 are separated by 207 nucleotidesUW163_RS13130 and UW163_RS13135 overlap by 4 nucleotides UW163_RS13120: UW163_RS13120 - SMC-Scp complex subunit ScpB, at 2,817,592 to 2,818,512 _RS13120 UW163_RS13125: UW163_RS13125 - rRNA pseudouridine synthase, at 2,818,600 to 2,820,387 _RS13125 UW163_RS13130: UW163_RS13130 - ribosome maturation factor RimP, at 2,820,595 to 2,821,083 _RS13130 UW163_RS13135: UW163_RS13135 - transcription termination/antitermination protein NusA, at 2,821,080 to 2,822,555 _RS13135 Position (kb) 2818 2819 2820 2821Strain fitness (log2 ratio) -2 -1 0 1 2at 2818.511 kb on - strandat 2820.187 kb on + strandat 2820.187 kb on + strand, within UW163_RS13125at 2820.187 kb on + strand, within UW163_RS13125

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
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2,818,511 - -0.8
2,820,187 + +2.0
2,820,187 + UW163_RS13125 0.89 -2.3
2,820,187 + UW163_RS13125 0.89 +0.4

Or see this region's nucleotide sequence