Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS06110 and UW163_RS06115 are separated by 258 nucleotides UW163_RS06115 and UW163_RS06120 are separated by 46 nucleotides UW163_RS06120 and UW163_RS06125 are separated by 320 nucleotides UW163_RS06125 and UW163_RS06130 are separated by 83 nucleotides
UW163_RS06110: UW163_RS06110 - hypothetical protein, at 1,319,407 to 1,320,618
_RS06110
UW163_RS06115: UW163_RS06115 - hypothetical protein, at 1,320,877 to 1,321,098
_RS06115
UW163_RS06120: UW163_RS06120 - hypothetical protein, at 1,321,145 to 1,321,363
_RS06120
UW163_RS06125: UW163_RS06125 - hypothetical protein, at 1,321,684 to 1,322,109
_RS06125
UW163_RS06130: UW163_RS06130 - hypothetical protein, at 1,322,193 to 1,322,567
_RS06130
Position (kb) 1321
1322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1320.210 kb on - strand, within UW163_RS06110 at 1320.210 kb on - strand, within UW163_RS06110 at 1320.210 kb on - strand, within UW163_RS06110 at 1320.210 kb on - strand, within UW163_RS06110 at 1320.383 kb on + strand, within UW163_RS06110 at 1320.383 kb on + strand, within UW163_RS06110 at 1320.383 kb on + strand, within UW163_RS06110 at 1320.383 kb on + strand, within UW163_RS06110 at 1320.383 kb on + strand, within UW163_RS06110 at 1320.563 kb on - strand at 1320.749 kb on - strand at 1320.750 kb on - strand at 1321.096 kb on + strand at 1321.096 kb on + strand at 1321.096 kb on + strand at 1321.097 kb on - strand at 1321.134 kb on + strand at 1321.135 kb on - strand at 1321.361 kb on + strand at 1321.361 kb on + strand at 1321.361 kb on + strand at 1321.361 kb on + strand at 1321.362 kb on - strand at 1321.362 kb on - strand at 1321.362 kb on - strand at 1321.362 kb on - strand at 1321.542 kb on + strand at 1321.542 kb on + strand at 1321.542 kb on + strand at 1321.542 kb on + strand at 1321.543 kb on - strand at 1321.593 kb on + strand at 1321.593 kb on + strand at 1321.594 kb on - strand at 1321.601 kb on - strand at 1321.700 kb on - strand at 1321.700 kb on - strand at 1321.846 kb on + strand, within UW163_RS06125 at 1321.879 kb on + strand, within UW163_RS06125 at 1321.879 kb on + strand, within UW163_RS06125 at 1321.880 kb on - strand, within UW163_RS06125 at 1321.912 kb on + strand, within UW163_RS06125 at 1322.319 kb on + strand, within UW163_RS06130 at 1322.319 kb on + strand, within UW163_RS06130 at 1322.320 kb on - strand, within UW163_RS06130 at 1322.320 kb on - strand, within UW163_RS06130 at 1322.323 kb on - strand, within UW163_RS06130
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,320,210 - UW163_RS06110 0.66 -0.5 1,320,210 - UW163_RS06110 0.66 +2.4 1,320,210 - UW163_RS06110 0.66 -0.8 1,320,210 - UW163_RS06110 0.66 -0.3 1,320,383 + UW163_RS06110 0.81 -1.7 1,320,383 + UW163_RS06110 0.81 -1.8 1,320,383 + UW163_RS06110 0.81 -3.2 1,320,383 + UW163_RS06110 0.81 +1.8 1,320,383 + UW163_RS06110 0.81 -1.1 1,320,563 - -2.3 1,320,749 - -1.1 1,320,750 - +2.4 1,321,096 + -1.7 1,321,096 + -0.3 1,321,096 + +1.9 1,321,097 - -1.5 1,321,134 + +0.3 1,321,135 - +2.4 1,321,361 + +0.8 1,321,361 + -2.3 1,321,361 + -0.4 1,321,361 + +0.2 1,321,362 - -0.3 1,321,362 - +2.4 1,321,362 - -1.1 1,321,362 - -1.7 1,321,542 + -1.1 1,321,542 + -0.4 1,321,542 + +1.0 1,321,542 + -1.5 1,321,543 - -0.2 1,321,593 + +2.4 1,321,593 + -1.1 1,321,594 - +0.1 1,321,601 - +0.8 1,321,700 - +2.4 1,321,700 - -1.2 1,321,846 + UW163_RS06125 0.38 +2.4 1,321,879 + UW163_RS06125 0.46 +2.4 1,321,879 + UW163_RS06125 0.46 +0.3 1,321,880 - UW163_RS06125 0.46 -2.1 1,321,912 + UW163_RS06125 0.54 -1.2 1,322,319 + UW163_RS06130 0.34 -1.0 1,322,319 + UW163_RS06130 0.34 -0.1 1,322,320 - UW163_RS06130 0.34 +0.8 1,322,320 - UW163_RS06130 0.34 +1.2 1,322,323 - UW163_RS06130 0.35 +1.4
Or see this region's nucleotide sequence