Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS03000 and UW163_RS03005 are separated by 204 nucleotides UW163_RS03005 and UW163_RS03010 are separated by 180 nucleotides UW163_RS03010 and UW163_RS03015 are separated by 58 nucleotides UW163_RS03015 and UW163_RS03020 are separated by 101 nucleotides
UW163_RS03000: UW163_RS03000 - DUF1328 domain-containing protein, at 620,563 to 620,760
_RS03000
UW163_RS03005: UW163_RS03005 - DUF1840 domain-containing protein, at 620,965 to 621,285
_RS03005
UW163_RS03010: UW163_RS03010 - arginine--tRNA ligase, at 621,466 to 623,268
_RS03010
UW163_RS03015: UW163_RS03015 - SPOR domain-containing protein, at 623,327 to 624,049
_RS03015
UW163_RS03020: UW163_RS03020 - thiol:disulfide interchange protein DsbA/DsbL, at 624,151 to 624,807
_RS03020
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 620.502 kb on + strand at 620.502 kb on + strand at 620.503 kb on - strand at 621.273 kb on + strand at 621.274 kb on - strand at 621.314 kb on - strand at 623.267 kb on - strand at 623.300 kb on - strand at 623.302 kb on - strand at 623.438 kb on + strand, within UW163_RS03015 at 623.438 kb on + strand, within UW163_RS03015 at 623.438 kb on + strand, within UW163_RS03015 at 623.439 kb on - strand, within UW163_RS03015
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct remove 620,502 + +0.7 620,502 + -0.6 620,503 - +0.3 621,273 + -0.5 621,274 - -0.7 621,314 - +2.3 623,267 - -3.0 623,300 - -0.1 623,302 - +0.3 623,438 + UW163_RS03015 0.15 +1.3 623,438 + UW163_RS03015 0.15 +0.3 623,438 + UW163_RS03015 0.15 +2.3 623,439 - UW163_RS03015 0.15 +2.3
Or see this region's nucleotide sequence