Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS02995 and UW163_RS03000 are separated by 142 nucleotides UW163_RS03000 and UW163_RS03005 are separated by 204 nucleotides UW163_RS03005 and UW163_RS03010 are separated by 180 nucleotides
UW163_RS02995: UW163_RS02995 - sensor histidine kinase, at 618,993 to 620,420
_RS02995
UW163_RS03000: UW163_RS03000 - DUF1328 domain-containing protein, at 620,563 to 620,760
_RS03000
UW163_RS03005: UW163_RS03005 - DUF1840 domain-containing protein, at 620,965 to 621,285
_RS03005
UW163_RS03010: UW163_RS03010 - arginine--tRNA ligase, at 621,466 to 623,268
_RS03010
Position (kb) 620
621
622 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 620.045 kb on - strand, within UW163_RS02995 at 620.134 kb on + strand, within UW163_RS02995 at 620.189 kb on - strand, within UW163_RS02995 at 620.189 kb on - strand, within UW163_RS02995 at 620.200 kb on + strand, within UW163_RS02995 at 620.200 kb on + strand, within UW163_RS02995 at 620.200 kb on + strand, within UW163_RS02995 at 620.201 kb on - strand, within UW163_RS02995 at 620.201 kb on - strand, within UW163_RS02995 at 620.502 kb on + strand at 620.502 kb on + strand at 620.503 kb on - strand at 621.273 kb on + strand at 621.274 kb on - strand at 621.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct remove 620,045 - UW163_RS02995 0.74 +4.6 620,134 + UW163_RS02995 0.80 +4.7 620,189 - UW163_RS02995 0.84 +4.5 620,189 - UW163_RS02995 0.84 +3.4 620,200 + UW163_RS02995 0.85 +4.9 620,200 + UW163_RS02995 0.85 +4.1 620,200 + UW163_RS02995 0.85 +3.8 620,201 - UW163_RS02995 0.85 +4.6 620,201 - UW163_RS02995 0.85 +3.8 620,502 + +0.7 620,502 + -0.6 620,503 - +0.3 621,273 + -0.5 621,274 - -0.7 621,314 - +2.3
Or see this region's nucleotide sequence