Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01925 and UW163_RS01930 are separated by 17 nucleotides UW163_RS01930 and UW163_RS01935 overlap by 1 nucleotides UW163_RS01935 and UW163_RS01940 are separated by 16 nucleotides UW163_RS01940 and UW163_RS01945 overlap by 4 nucleotides
UW163_RS01925: UW163_RS01925 - membrane protein, at 405,094 to 405,807
_RS01925
UW163_RS01930: UW163_RS01930 - histidine phosphatase family protein, at 405,825 to 406,505
_RS01930
UW163_RS01935: UW163_RS01935 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 406,505 to 407,140
_RS01935
UW163_RS01940: UW163_RS01940 - D-tyrosyl-tRNA(Tyr) deacylase, at 407,157 to 407,657
_RS01940
UW163_RS01945: UW163_RS01945 - tyrosine--tRNA ligase, at 407,654 to 408,925
_RS01945
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 405.508 kb on + strand, within UW163_RS01925 at 405.509 kb on - strand, within UW163_RS01925 at 405.509 kb on - strand, within UW163_RS01925 at 405.610 kb on + strand, within UW163_RS01925 at 405.625 kb on + strand, within UW163_RS01925 at 405.625 kb on + strand, within UW163_RS01925 at 405.625 kb on + strand, within UW163_RS01925 at 405.625 kb on + strand, within UW163_RS01925 at 405.625 kb on + strand, within UW163_RS01925 at 405.626 kb on - strand, within UW163_RS01925 at 405.673 kb on + strand, within UW163_RS01925 at 405.673 kb on + strand, within UW163_RS01925 at 405.673 kb on + strand, within UW163_RS01925 at 405.673 kb on + strand, within UW163_RS01925 at 405.674 kb on - strand, within UW163_RS01925 at 405.718 kb on + strand, within UW163_RS01925 at 405.718 kb on + strand, within UW163_RS01925 at 405.761 kb on - strand at 405.761 kb on - strand at 406.539 kb on + strand at 406.540 kb on - strand at 406.540 kb on - strand at 406.648 kb on - strand, within UW163_RS01935 at 406.660 kb on + strand, within UW163_RS01935 at 406.660 kb on + strand, within UW163_RS01935 at 406.660 kb on + strand, within UW163_RS01935 at 406.661 kb on - strand, within UW163_RS01935 at 406.661 kb on - strand, within UW163_RS01935 at 406.661 kb on - strand, within UW163_RS01935 at 406.662 kb on + strand, within UW163_RS01935 at 406.663 kb on - strand, within UW163_RS01935 at 406.714 kb on - strand, within UW163_RS01935 at 406.714 kb on - strand, within UW163_RS01935 at 406.714 kb on - strand, within UW163_RS01935 at 406.716 kb on + strand, within UW163_RS01935 at 406.716 kb on + strand, within UW163_RS01935 at 406.758 kb on + strand, within UW163_RS01935 at 406.759 kb on - strand, within UW163_RS01935 at 406.759 kb on - strand, within UW163_RS01935 at 406.759 kb on - strand, within UW163_RS01935 at 407.089 kb on - strand at 407.111 kb on - strand at 407.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct remove 405,508 + UW163_RS01925 0.58 +0.1 405,509 - UW163_RS01925 0.58 +0.1 405,509 - UW163_RS01925 0.58 +0.2 405,610 + UW163_RS01925 0.72 +2.7 405,625 + UW163_RS01925 0.74 -2.2 405,625 + UW163_RS01925 0.74 +1.6 405,625 + UW163_RS01925 0.74 +0.5 405,625 + UW163_RS01925 0.74 -0.9 405,625 + UW163_RS01925 0.74 +2.3 405,626 - UW163_RS01925 0.75 +2.3 405,673 + UW163_RS01925 0.81 -1.1 405,673 + UW163_RS01925 0.81 +0.8 405,673 + UW163_RS01925 0.81 +0.3 405,673 + UW163_RS01925 0.81 -1.1 405,674 - UW163_RS01925 0.81 -1.3 405,718 + UW163_RS01925 0.87 +0.4 405,718 + UW163_RS01925 0.87 +1.3 405,761 - +1.3 405,761 - -0.9 406,539 + -0.7 406,540 - +0.4 406,540 - +1.4 406,648 - UW163_RS01935 0.22 -0.6 406,660 + UW163_RS01935 0.24 -0.6 406,660 + UW163_RS01935 0.24 +3.8 406,660 + UW163_RS01935 0.24 +0.4 406,661 - UW163_RS01935 0.25 +0.5 406,661 - UW163_RS01935 0.25 +2.3 406,661 - UW163_RS01935 0.25 -0.8 406,662 + UW163_RS01935 0.25 +0.4 406,663 - UW163_RS01935 0.25 +0.0 406,714 - UW163_RS01935 0.33 -1.3 406,714 - UW163_RS01935 0.33 -0.8 406,714 - UW163_RS01935 0.33 -0.5 406,716 + UW163_RS01935 0.33 -0.2 406,716 + UW163_RS01935 0.33 +0.9 406,758 + UW163_RS01935 0.40 -1.3 406,759 - UW163_RS01935 0.40 -2.3 406,759 - UW163_RS01935 0.40 +0.1 406,759 - UW163_RS01935 0.40 -0.2 407,089 - -2.5 407,111 - +0.9 407,111 - -1.1
Or see this region's nucleotide sequence