Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01765 and UW163_RS01770 are separated by 2 nucleotides UW163_RS01770 and UW163_RS01775 are separated by 392 nucleotides
UW163_RS01765: UW163_RS01765 - PhoH family protein, at 368,773 to 369,765
_RS01765
UW163_RS01770: UW163_RS01770 - rRNA maturation RNAse YbeY, at 369,768 to 370,532
_RS01770
UW163_RS01775: UW163_RS01775 - hypothetical protein, at 370,925 to 372,226
_RS01775
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1
2 at 368.965 kb on + strand, within UW163_RS01765 at 368.966 kb on - strand, within UW163_RS01765 at 368.966 kb on - strand, within UW163_RS01765 at 369.049 kb on + strand, within UW163_RS01765 at 369.154 kb on + strand at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.221 kb on - strand, within UW163_RS01765 at 369.221 kb on - strand, within UW163_RS01765 at 369.356 kb on - strand, within UW163_RS01765 at 369.370 kb on + strand, within UW163_RS01765 at 369.370 kb on + strand, within UW163_RS01765 at 369.370 kb on + strand, within UW163_RS01765 at 369.371 kb on - strand, within UW163_RS01765 at 369.454 kb on + strand, within UW163_RS01765 at 369.454 kb on + strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.731 kb on - strand at 370.794 kb on + strand at 370.795 kb on - strand at 371.042 kb on + strand at 371.238 kb on - strand, within UW163_RS01775 at 371.309 kb on + strand, within UW163_RS01775 at 371.336 kb on + strand, within UW163_RS01775 at 371.336 kb on + strand, within UW163_RS01775 at 371.336 kb on + strand, within UW163_RS01775 at 371.337 kb on - strand, within UW163_RS01775 at 371.337 kb on - strand, within UW163_RS01775 at 371.337 kb on - strand, within UW163_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct remove 368,965 + UW163_RS01765 0.19 -0.2 368,966 - UW163_RS01765 0.19 +0.2 368,966 - UW163_RS01765 0.19 -0.4 369,049 + UW163_RS01765 0.28 +2.2 369,154 + +1.2 369,220 + UW163_RS01765 0.45 +1.6 369,220 + UW163_RS01765 0.45 -0.4 369,220 + UW163_RS01765 0.45 -2.6 369,220 + UW163_RS01765 0.45 -0.1 369,220 + UW163_RS01765 0.45 +0.5 369,221 - UW163_RS01765 0.45 +2.2 369,221 - UW163_RS01765 0.45 -0.7 369,356 - UW163_RS01765 0.59 -0.1 369,370 + UW163_RS01765 0.60 -1.0 369,370 + UW163_RS01765 0.60 -0.9 369,370 + UW163_RS01765 0.60 -2.2 369,371 - UW163_RS01765 0.60 -0.7 369,454 + UW163_RS01765 0.69 -0.4 369,454 + UW163_RS01765 0.69 -1.1 369,455 - UW163_RS01765 0.69 -0.4 369,455 - UW163_RS01765 0.69 +1.2 369,455 - UW163_RS01765 0.69 -1.1 369,455 - UW163_RS01765 0.69 -1.6 369,731 - +2.2 370,794 + -0.7 370,795 - -1.8 371,042 + -0.4 371,238 - UW163_RS01775 0.24 +0.7 371,309 + UW163_RS01775 0.29 +2.2 371,336 + UW163_RS01775 0.32 -0.5 371,336 + UW163_RS01775 0.32 -1.0 371,336 + UW163_RS01775 0.32 +0.3 371,337 - UW163_RS01775 0.32 -1.7 371,337 - UW163_RS01775 0.32 -2.0 371,337 - UW163_RS01775 0.32 -0.4
Or see this region's nucleotide sequence