Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS00505 and UW163_RS00510 are separated by 9 nucleotides UW163_RS00510 and UW163_RS00515 are separated by 86 nucleotides UW163_RS00515 and UW163_RS00520 are separated by 159 nucleotides UW163_RS00520 and UW163_RS00525 are separated by 43 nucleotides
UW163_RS00505: UW163_RS00505 - flavin reductase, at 102,386 to 102,958
_RS00505
UW163_RS00510: UW163_RS00510 - DUF3079 domain-containing protein, at 102,968 to 103,174
_RS00510
UW163_RS00515: UW163_RS00515 - Lrp/AsnC family transcriptional regulator, at 103,261 to 103,785
_RS00515
UW163_RS00520: UW163_RS00520 - arylformamidase, at 103,945 to 104,574
_RS00520
UW163_RS00525: UW163_RS00525 - kynureninase, at 104,618 to 105,871
_RS00525
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.331 kb on + strand at 102.331 kb on + strand at 102.332 kb on - strand at 102.671 kb on + strand, within UW163_RS00505 at 102.672 kb on - strand, within UW163_RS00505 at 102.759 kb on - strand, within UW163_RS00505 at 102.833 kb on + strand, within UW163_RS00505 at 102.833 kb on + strand, within UW163_RS00505 at 102.956 kb on + strand at 103.029 kb on + strand, within UW163_RS00510 at 103.030 kb on - strand, within UW163_RS00510 at 103.110 kb on + strand, within UW163_RS00510 at 103.110 kb on + strand, within UW163_RS00510 at 103.110 kb on + strand, within UW163_RS00510 at 103.111 kb on - strand, within UW163_RS00510 at 103.433 kb on + strand, within UW163_RS00515 at 103.434 kb on - strand, within UW163_RS00515 at 103.469 kb on + strand, within UW163_RS00515 at 103.469 kb on + strand, within UW163_RS00515 at 103.470 kb on + strand, within UW163_RS00515 at 103.470 kb on - strand, within UW163_RS00515 at 103.470 kb on - strand, within UW163_RS00515 at 103.494 kb on - strand, within UW163_RS00515 at 103.494 kb on - strand, within UW163_RS00515 at 104.167 kb on + strand, within UW163_RS00520 at 104.167 kb on + strand, within UW163_RS00520 at 104.168 kb on - strand, within UW163_RS00520 at 104.168 kb on - strand, within UW163_RS00520 at 104.228 kb on + strand, within UW163_RS00520 at 104.229 kb on - strand, within UW163_RS00520 at 104.229 kb on - strand, within UW163_RS00520 at 104.275 kb on + strand, within UW163_RS00520 at 104.276 kb on - strand, within UW163_RS00520 at 104.276 kb on - strand, within UW163_RS00520 at 104.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=stem; GrowthSubstrate=calcine_clay; Collection=direct remove 102,331 + -0.8 102,331 + +1.1 102,332 - +0.0 102,671 + UW163_RS00505 0.50 +0.1 102,672 - UW163_RS00505 0.50 -1.1 102,759 - UW163_RS00505 0.65 +0.1 102,833 + UW163_RS00505 0.78 +0.5 102,833 + UW163_RS00505 0.78 -2.0 102,956 + -0.2 103,029 + UW163_RS00510 0.29 +2.1 103,030 - UW163_RS00510 0.30 -1.9 103,110 + UW163_RS00510 0.69 -0.2 103,110 + UW163_RS00510 0.69 -1.6 103,110 + UW163_RS00510 0.69 +0.5 103,111 - UW163_RS00510 0.69 -0.0 103,433 + UW163_RS00515 0.33 -1.8 103,434 - UW163_RS00515 0.33 +0.8 103,469 + UW163_RS00515 0.40 -1.2 103,469 + UW163_RS00515 0.40 +0.3 103,470 + UW163_RS00515 0.40 -0.6 103,470 - UW163_RS00515 0.40 +1.1 103,470 - UW163_RS00515 0.40 -1.2 103,494 - UW163_RS00515 0.44 +0.1 103,494 - UW163_RS00515 0.44 -0.5 104,167 + UW163_RS00520 0.35 +0.8 104,167 + UW163_RS00520 0.35 -0.3 104,168 - UW163_RS00520 0.35 +0.5 104,168 - UW163_RS00520 0.35 -0.7 104,228 + UW163_RS00520 0.45 +2.2 104,229 - UW163_RS00520 0.45 +0.5 104,229 - UW163_RS00520 0.45 -1.9 104,275 + UW163_RS00520 0.52 -1.6 104,276 - UW163_RS00520 0.53 +1.7 104,276 - UW163_RS00520 0.53 +0.7 104,712 - +0.2
Or see this region's nucleotide sequence