Strain Fitness in Escherichia coli BW25113 around b4475

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,552,885	+	malT	b3418	0.66	+0.3
3,552,936	-	malT	b3418	0.68	+0.2
3,552,942	+	malT	b3418	0.68	+0.4
3,552,942	+	malT	b3418	0.68	+1.2
3,553,017	+	malT	b3418	0.71	-0.1
3,553,119	-	malT	b3418	0.74	-0.3
3,553,119	-	malT	b3418	0.74	-1.6
3,553,142	-	malT	b3418	0.75	-0.0
3,553,179	+	malT	b3418	0.77	+0.0
3,553,258	-	malT	b3418	0.79	+0.2
3,553,309	+	malT	b3418	0.81	+0.1
3,553,317	+	malT	b3418	0.82	-0.1
3,553,351	+	malT	b3418	0.83	+0.3
3,553,351	+	malT	b3418	0.83	+0.8
3,553,365	-	malT	b3418	0.83	+0.3
3,553,411	+	malT	b3418	0.85	+0.9
3,553,411	+	malT	b3418	0.85	-0.9
3,553,480	-	malT	b3418	0.88	+0.5
3,553,493	+	malT	b3418	0.88	-0.4
3,553,493	+	malT	b3418	0.88	+0.9
3,553,622	+				+0.8
3,553,622	+				+0.7
3,553,628	+				+0.3
3,553,628	+				-0.1
3,553,628	+				-0.2
3,553,628	+				-0.3
3,553,654	+				+0.1
3,553,654	+				-0.2
3,553,654	+				+0.9
3,553,657	-				+0.1
3,553,657	-				+0.3
3,553,662	-				-0.6
3,553,662	-				+0.3
3,553,765	+				+0.2
3,553,834	+				+0.2
3,553,848	-				+0.2
3,553,857	+				-0.6
3,553,880	-				+1.1
3,553,880	-				+0.5
3,553,919	+				-0.7
3,553,934	+				+0.5
3,553,942	-				-0.4
3,553,951	+				+0.5
3,553,964	-	rtcA	b4475	0.11	+0.8
3,553,966	-	rtcA	b4475	0.11	+0.0
3,554,026	-	rtcA	b4475	0.17	+0.2
3,554,026	-	rtcA	b4475	0.17	+0.1
3,554,035	-	rtcA	b4475	0.18	+0.3
3,554,035	-	rtcA	b4475	0.18	+0.2
3,554,075	-	rtcA	b4475	0.22	-1.0
3,554,077	-	rtcA	b4475	0.22	-0.2
3,554,091	+	rtcA	b4475	0.23	+0.2
3,554,149	-	rtcA	b4475	0.29	-0.0
3,554,168	+	rtcA	b4475	0.31	+0.2
3,554,168	+	rtcA	b4475	0.31	+0.4
3,554,176	-	rtcA	b4475	0.32	-0.3
3,554,178	+	rtcA	b4475	0.32	-0.6
3,554,178	+	rtcA	b4475	0.32	+0.6
3,554,204	-	rtcA	b4475	0.34	+0.2
3,554,228	-	rtcA	b4475	0.37	+0.5
3,554,248	+	rtcA	b4475	0.39	-0.2
3,554,256	+	rtcA	b4475	0.39	-0.4
3,554,312	+	rtcA	b4475	0.45	+1.2
3,554,312	+	rtcA	b4475	0.45	+1.2
3,554,336	+	rtcA	b4475	0.47	+0.2
3,554,338	+	rtcA	b4475	0.47	+0.4
3,554,378	-	rtcA	b4475	0.51	-0.3
3,554,457	+	rtcA	b4475	0.59	+0.0
3,554,457	+	rtcA	b4475	0.59	+0.1
3,554,497	+	rtcA	b4475	0.63	+0.1
3,554,528	+	rtcA	b4475	0.66	-0.0
3,554,530	+	rtcA	b4475	0.66	+0.5
3,554,534	-	rtcA	b4475	0.67	+0.2
3,554,534	-	rtcA	b4475	0.67	+0.2
3,554,656	+	rtcA	b4475	0.79	+0.9
3,554,664	-	rtcA	b4475	0.80	-0.3
3,554,664	-	rtcA	b4475	0.80	+0.4
3,554,671	+	rtcA	b4475	0.80	+0.2
3,554,679	-	rtcA	b4475	0.81	-0.8
3,554,679	-	rtcA	b4475	0.81	-0.2
3,554,679	-	rtcA	b4475	0.81	+0.3
3,554,679	-	rtcA	b4475	0.81	+0.4
3,554,722	-	rtcA	b4475	0.85	-0.5
3,554,722	-	rtcA	b4475	0.85	+2.1
3,554,767	-	rtcA	b4475	0.90	-0.1
3,554,767	-	rtcA	b4475	0.90	+1.5
3,554,770	+				+0.4
3,554,779	-				-0.0
3,554,800	+				+0.4
3,554,800	+				-0.2
3,554,869	-				-0.2
3,554,904	+				-0.5
3,554,904	+				+1.2
3,554,904	+				+0.3
3,554,904	+				+0.4
3,554,906	+				-0.3
3,554,912	-				+0.4
3,554,912	-				+0.6
3,554,912	-				+1.2
3,554,912	-				-0.4
3,554,912	-				-1.3
3,554,914	-				-0.5
3,554,914	-				+0.5
3,555,004	-	rtcB	b3421	0.11	-0.1
3,555,081	-	rtcB	b3421	0.17	+0.3
3,555,175	+	rtcB	b3421	0.24	-0.2
3,555,196	-	rtcB	b3421	0.26	-0.4
3,555,198	-	rtcB	b3421	0.26	-0.5
3,555,215	+	rtcB	b3421	0.28	+0.6
3,555,243	-	rtcB	b3421	0.30	+0.8
3,555,243	-	rtcB	b3421	0.30	+0.0
3,555,284	-	rtcB	b3421	0.33	-0.2
3,555,394	-	rtcB	b3421	0.42	-0.2
3,555,398	+	rtcB	b3421	0.43	+0.4
3,555,428	+	rtcB	b3421	0.45	-0.3
3,555,428	-	rtcB	b3421	0.45	+1.7
3,555,428	-	rtcB	b3421	0.45	-0.4
3,555,437	+	rtcB	b3421	0.46	+0.6
3,555,447	-	rtcB	b3421	0.47	-0.2
3,555,465	+	rtcB	b3421	0.48	+0.3
3,555,535	+	rtcB	b3421	0.54	-0.2
3,555,552	+	rtcB	b3421	0.55	+0.1
3,555,554	+	rtcB	b3421	0.55	+0.5
3,555,565	-	rtcB	b3421	0.56	+0.6
3,555,565	-	rtcB	b3421	0.56	+0.4
3,555,581	+	rtcB	b3421	0.58	+1.5
3,555,591	+	rtcB	b3421	0.58	+0.0
3,555,591	+	rtcB	b3421	0.58	-0.2
3,555,714	+	rtcB	b3421	0.68	+0.4
3,555,720	-	rtcB	b3421	0.69	-0.0
3,555,749	+	rtcB	b3421	0.71	+0.2
3,555,749	+	rtcB	b3421	0.71	-0.1
3,555,826	-	rtcB	b3421	0.78	-0.8
3,555,826	-	rtcB	b3421	0.78	+0.3