Experiment: R2A with EDTA 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5430 and Atu5431 are separated by 330 nucleotides Atu5431 and Atu5432 are separated by 178 nucleotides Atu5432 and Atu5433 are separated by 424 nucleotides
Atu5430: Atu5430 - hypothetical protein, at 424,011 to 424,433
Atu5430
Atu5431: Atu5431 - hypothetical protein, at 424,764 to 425,153
Atu5431
Atu5432: Atu5432 - hypothetical protein, at 425,332 to 425,640
Atu5432
Atu5433: Atu5433 - LacI family transcription regulator, at 426,065 to 427,075
Atu5433
Position (kb) 424
425
426 Strain fitness (log2 ratio) -1
0
1
2 at 423.788 kb on + strand at 423.925 kb on - strand at 423.942 kb on + strand at 424.041 kb on + strand at 424.049 kb on - strand at 424.178 kb on - strand, within Atu5430 at 424.287 kb on - strand, within Atu5430 at 424.341 kb on + strand, within Atu5430 at 424.392 kb on + strand at 424.430 kb on + strand at 424.451 kb on - strand at 424.487 kb on - strand at 424.500 kb on + strand at 424.539 kb on - strand at 424.558 kb on - strand at 424.614 kb on + strand at 424.647 kb on + strand at 424.677 kb on - strand at 424.702 kb on - strand at 424.747 kb on - strand at 424.784 kb on + strand at 424.792 kb on - strand at 424.792 kb on - strand at 424.792 kb on - strand at 424.800 kb on - strand at 424.819 kb on + strand, within Atu5431 at 424.870 kb on + strand, within Atu5431 at 424.886 kb on + strand, within Atu5431 at 424.894 kb on - strand, within Atu5431 at 424.894 kb on - strand, within Atu5431 at 424.899 kb on - strand, within Atu5431 at 425.017 kb on - strand, within Atu5431 at 425.030 kb on + strand, within Atu5431 at 425.030 kb on + strand, within Atu5431 at 425.089 kb on + strand, within Atu5431 at 425.094 kb on + strand, within Atu5431 at 425.113 kb on + strand, within Atu5431 at 425.121 kb on - strand at 425.151 kb on - strand at 425.167 kb on - strand at 425.257 kb on + strand at 425.263 kb on + strand at 425.270 kb on + strand at 425.278 kb on - strand at 425.359 kb on + strand at 425.409 kb on + strand, within Atu5432 at 425.502 kb on - strand, within Atu5432 at 425.596 kb on - strand, within Atu5432 at 425.618 kb on + strand at 425.618 kb on + strand at 425.710 kb on - strand at 425.721 kb on - strand at 425.783 kb on - strand at 425.803 kb on + strand at 425.818 kb on + strand at 425.830 kb on - strand at 425.850 kb on - strand at 425.850 kb on - strand at 425.872 kb on - strand at 425.874 kb on - strand at 425.874 kb on - strand at 425.874 kb on - strand at 425.874 kb on - strand at 425.952 kb on - strand at 425.959 kb on + strand at 425.959 kb on + strand at 425.992 kb on + strand at 426.000 kb on - strand at 426.000 kb on - strand at 426.051 kb on + strand at 426.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with EDTA 0.25 mM remove 423,788 + +1.0 423,925 - -0.2 423,942 + -1.3 424,041 + +0.8 424,049 - +0.1 424,178 - Atu5430 0.39 +1.1 424,287 - Atu5430 0.65 +0.2 424,341 + Atu5430 0.78 +0.3 424,392 + +0.6 424,430 + -0.1 424,451 - -0.0 424,487 - +1.8 424,500 + -0.3 424,539 - -0.2 424,558 - -0.2 424,614 + +1.2 424,647 + +0.2 424,677 - +0.1 424,702 - -0.6 424,747 - -0.5 424,784 + -0.2 424,792 - +1.2 424,792 - +2.4 424,792 - +0.0 424,800 - +0.3 424,819 + Atu5431 0.14 +0.1 424,870 + Atu5431 0.27 -1.5 424,886 + Atu5431 0.31 -1.1 424,894 - Atu5431 0.33 -0.4 424,894 - Atu5431 0.33 -0.3 424,899 - Atu5431 0.35 -1.1 425,017 - Atu5431 0.65 -0.6 425,030 + Atu5431 0.68 -0.5 425,030 + Atu5431 0.68 -0.0 425,089 + Atu5431 0.83 -0.6 425,094 + Atu5431 0.85 -0.6 425,113 + Atu5431 0.89 -0.6 425,121 - -0.4 425,151 - +0.9 425,167 - +0.2 425,257 + -0.0 425,263 + +0.6 425,270 + -0.3 425,278 - -0.6 425,359 + -0.5 425,409 + Atu5432 0.25 +1.1 425,502 - Atu5432 0.55 +0.5 425,596 - Atu5432 0.85 -0.3 425,618 + +0.4 425,618 + -0.5 425,710 - +0.5 425,721 - +1.0 425,783 - -0.8 425,803 + -1.5 425,818 + +0.2 425,830 - +0.8 425,850 - -0.2 425,850 - -0.4 425,872 - -0.2 425,874 - -0.6 425,874 - +1.4 425,874 - -0.8 425,874 - +1.1 425,952 - +0.4 425,959 + +1.8 425,959 + -0.2 425,992 + -0.3 426,000 - -0.1 426,000 - +0.6 426,051 + -0.0 426,059 - +0.8
Or see this region's nucleotide sequence