Strain Fitness in Pseudomonas simiae WCS417 around PS417_04290

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04285 and PS417_04290 are separated by 45 nucleotidesPS417_04290 and PS417_04295 are separated by 108 nucleotides PS417_04285: PS417_04285 - protease TldD, at 961,588 to 963,030 _04285 PS417_04290: PS417_04290 - hypothetical protein, at 963,076 to 963,597 _04290 PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052 _04295 Position (kb) 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 962.228 kb on - strand, within PS417_04285at 962.422 kb on + strand, within PS417_04285at 962.575 kb on + strand, within PS417_04285at 962.575 kb on + strand, within PS417_04285at 962.576 kb on - strand, within PS417_04285at 962.644 kb on + strand, within PS417_04285at 962.680 kb on + strand, within PS417_04285at 962.680 kb on + strand, within PS417_04285at 962.680 kb on + strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.740 kb on + strand, within PS417_04285at 962.741 kb on - strand, within PS417_04285at 962.813 kb on - strand, within PS417_04285at 962.938 kb on - strandat 962.938 kb on - strandat 963.029 kb on - strandat 963.116 kb on + strandat 963.116 kb on + strandat 963.129 kb on + strand, within PS417_04290at 963.154 kb on - strand, within PS417_04290at 963.288 kb on + strand, within PS417_04290at 963.402 kb on + strand, within PS417_04290at 963.501 kb on + strand, within PS417_04290at 963.502 kb on - strand, within PS417_04290at 963.585 kb on - strandat 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.911 kb on - strand, within PS417_04295at 963.911 kb on - strand, within PS417_04295at 964.213 kb on + strand, within PS417_04295at 964.214 kb on - strand, within PS417_04295at 964.243 kb on + strand, within PS417_04295at 964.260 kb on + strand, within PS417_04295at 964.312 kb on + strand, within PS417_04295at 964.318 kb on + strand, within PS417_04295at 964.319 kb on - strand, within PS417_04295at 964.319 kb on - strand, within PS417_04295

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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962,228 - PS417_04285 0.44 -0.1
962,422 + PS417_04285 0.58 -0.3
962,575 + PS417_04285 0.68 -0.2
962,575 + PS417_04285 0.68 +0.6
962,576 - PS417_04285 0.68 -0.3
962,644 + PS417_04285 0.73 -0.5
962,680 + PS417_04285 0.76 +0.3
962,680 + PS417_04285 0.76 +0.5
962,680 + PS417_04285 0.76 +0.4
962,681 - PS417_04285 0.76 +0.1
962,681 - PS417_04285 0.76 +0.1
962,681 - PS417_04285 0.76 -0.6
962,681 - PS417_04285 0.76 +0.1
962,681 - PS417_04285 0.76 +0.9
962,681 - PS417_04285 0.76 -0.4
962,740 + PS417_04285 0.80 +0.6
962,741 - PS417_04285 0.80 +0.8
962,813 - PS417_04285 0.85 -1.0
962,938 - +0.2
962,938 - +0.1
963,029 - -0.7
963,116 + +0.2
963,116 + +0.5
963,129 + PS417_04290 0.10 -1.3
963,154 - PS417_04290 0.15 -0.9
963,288 + PS417_04290 0.41 -0.5
963,402 + PS417_04290 0.62 -0.8
963,501 + PS417_04290 0.81 -2.1
963,502 - PS417_04290 0.82 -0.7
963,585 - -1.8
963,910 + PS417_04295 0.15 -0.2
963,910 + PS417_04295 0.15 +0.9
963,910 + PS417_04295 0.15 -0.4
963,910 + PS417_04295 0.15 -0.9
963,911 - PS417_04295 0.15 +0.8
963,911 - PS417_04295 0.15 -1.1
964,213 + PS417_04295 0.38 -0.4
964,214 - PS417_04295 0.38 -0.0
964,243 + PS417_04295 0.40 +0.7
964,260 + PS417_04295 0.41 -0.5
964,312 + PS417_04295 0.45 -0.7
964,318 + PS417_04295 0.45 +1.9
964,319 - PS417_04295 0.46 -1.1
964,319 - PS417_04295 0.46 -0.4

Or see this region's nucleotide sequence