Strain Fitness in Pseudomonas simiae WCS417 around PS417_28355

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28350 and PS417_28355 are separated by 87 nucleotidesPS417_28355 and PS417_28360 overlap by 10 nucleotidesPS417_28360 and PS417_28365 are separated by 65 nucleotides PS417_28350: PS417_28350 - fatty acid methyltransferase, at 6,119,426 to 6,120,610 _28350 PS417_28355: PS417_28355 - cardiolipin synthetase, at 6,120,698 to 6,121,486 _28355 PS417_28360: PS417_28360 - hypothetical protein, at 6,121,477 to 6,122,322 _28360 PS417_28365: PS417_28365 - membrane protein, at 6,122,388 to 6,122,642 _28365 Position (kb) 6120 6121 6122Strain fitness (log2 ratio) -2 -1 0 1at 6119.751 kb on + strand, within PS417_28350at 6119.784 kb on - strand, within PS417_28350at 6119.909 kb on - strand, within PS417_28350at 6119.909 kb on - strand, within PS417_28350at 6120.126 kb on + strand, within PS417_28350at 6120.127 kb on - strand, within PS417_28350at 6120.228 kb on + strand, within PS417_28350at 6120.229 kb on - strand, within PS417_28350at 6120.229 kb on - strand, within PS417_28350at 6120.259 kb on - strand, within PS417_28350at 6120.259 kb on - strand, within PS417_28350at 6120.259 kb on - strand, within PS417_28350at 6120.279 kb on + strand, within PS417_28350at 6120.279 kb on + strand, within PS417_28350at 6120.279 kb on + strand, within PS417_28350at 6120.279 kb on + strand, within PS417_28350at 6120.280 kb on - strand, within PS417_28350at 6120.280 kb on - strand, within PS417_28350at 6120.280 kb on - strand, within PS417_28350at 6120.293 kb on - strand, within PS417_28350at 6120.293 kb on - strand, within PS417_28350at 6120.581 kb on - strandat 6120.584 kb on + strandat 6120.670 kb on - strandat 6120.696 kb on + strandat 6120.696 kb on + strandat 6120.697 kb on - strandat 6120.700 kb on - strandat 6120.871 kb on + strand, within PS417_28355at 6120.877 kb on - strand, within PS417_28355at 6121.117 kb on + strand, within PS417_28355at 6121.251 kb on + strand, within PS417_28355at 6121.344 kb on + strand, within PS417_28355at 6121.625 kb on + strand, within PS417_28360at 6121.676 kb on + strand, within PS417_28360at 6121.677 kb on - strand, within PS417_28360at 6121.784 kb on + strand, within PS417_28360at 6121.883 kb on + strand, within PS417_28360at 6121.883 kb on + strand, within PS417_28360at 6121.883 kb on + strand, within PS417_28360at 6121.884 kb on - strand, within PS417_28360at 6121.884 kb on - strand, within PS417_28360at 6121.884 kb on - strand, within PS417_28360at 6122.180 kb on + strand, within PS417_28360at 6122.181 kb on - strand, within PS417_28360at 6122.207 kb on + strand, within PS417_28360at 6122.267 kb on + strandat 6122.268 kb on - strandat 6122.268 kb on - strandat 6122.268 kb on - strandat 6122.281 kb on + strandat 6122.316 kb on + strandat 6122.316 kb on + strandat 6122.317 kb on - strandat 6122.322 kb on + strandat 6122.323 kb on - strandat 6122.323 kb on - strandat 6122.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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6,119,751 + PS417_28350 0.27 -1.8
6,119,784 - PS417_28350 0.30 -1.6
6,119,909 - PS417_28350 0.41 +0.5
6,119,909 - PS417_28350 0.41 -0.2
6,120,126 + PS417_28350 0.59 -0.1
6,120,127 - PS417_28350 0.59 -0.2
6,120,228 + PS417_28350 0.68 +0.3
6,120,229 - PS417_28350 0.68 -0.2
6,120,229 - PS417_28350 0.68 +1.1
6,120,259 - PS417_28350 0.70 -2.1
6,120,259 - PS417_28350 0.70 -0.3
6,120,259 - PS417_28350 0.70 +1.0
6,120,279 + PS417_28350 0.72 -1.6
6,120,279 + PS417_28350 0.72 -0.2
6,120,279 + PS417_28350 0.72 -0.1
6,120,279 + PS417_28350 0.72 +1.1
6,120,280 - PS417_28350 0.72 -0.4
6,120,280 - PS417_28350 0.72 +0.2
6,120,280 - PS417_28350 0.72 -0.0
6,120,293 - PS417_28350 0.73 +0.3
6,120,293 - PS417_28350 0.73 +0.8
6,120,581 - -0.0
6,120,584 + +0.3
6,120,670 - -0.5
6,120,696 + +0.1
6,120,696 + +0.1
6,120,697 - +0.1
6,120,700 - -0.3
6,120,871 + PS417_28355 0.22 -0.3
6,120,877 - PS417_28355 0.23 -0.9
6,121,117 + PS417_28355 0.53 -0.3
6,121,251 + PS417_28355 0.70 -0.8
6,121,344 + PS417_28355 0.82 +0.2
6,121,625 + PS417_28360 0.17 +1.5
6,121,676 + PS417_28360 0.24 +0.0
6,121,677 - PS417_28360 0.24 -0.3
6,121,784 + PS417_28360 0.36 +0.3
6,121,883 + PS417_28360 0.48 +0.2
6,121,883 + PS417_28360 0.48 -0.8
6,121,883 + PS417_28360 0.48 -0.1
6,121,884 - PS417_28360 0.48 +0.2
6,121,884 - PS417_28360 0.48 +0.0
6,121,884 - PS417_28360 0.48 -0.3
6,122,180 + PS417_28360 0.83 +0.2
6,122,181 - PS417_28360 0.83 +0.8
6,122,207 + PS417_28360 0.86 +1.1
6,122,267 + +0.2
6,122,268 - -0.0
6,122,268 - +0.2
6,122,268 - +0.0
6,122,281 + -0.5
6,122,316 + +0.5
6,122,316 + +0.1
6,122,317 - +0.1
6,122,322 + -0.2
6,122,323 - +0.2
6,122,323 - -0.2
6,122,323 - -0.0

Or see this region's nucleotide sequence