Strain Fitness in Pseudomonas simiae WCS417 around PS417_01885

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01870 and PS417_01875 are separated by 144 nucleotidesPS417_01875 and PS417_01880 are separated by 105 nucleotidesPS417_01880 and PS417_01885 are separated by 12 nucleotidesPS417_01885 and PS417_01890 are separated by 78 nucleotidesPS417_01890 and PS417_01895 are separated by 27 nucleotides PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782 _01870 PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202 _01875 PS417_01880: PS417_01880 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 416,308 to 416,730 _01880 PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726 _01885 PS417_01890: PS417_01890 - TetR family transcriptional regulator, at 417,805 to 418,425 _01890 PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135 _01895 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1 2at 415.783 kb on - strandat 415.783 kb on - strandat 415.817 kb on - strandat 415.831 kb on - strandat 415.855 kb on + strandat 415.855 kb on + strandat 415.855 kb on + strandat 415.856 kb on - strandat 415.856 kb on - strandat 415.936 kb on - strandat 415.936 kb on - strandat 416.049 kb on + strand, within PS417_01875at 416.087 kb on + strand, within PS417_01875at 416.289 kb on - strandat 416.367 kb on + strand, within PS417_01880at 416.368 kb on - strand, within PS417_01880at 416.411 kb on - strand, within PS417_01880at 416.547 kb on + strand, within PS417_01880at 416.590 kb on - strand, within PS417_01880at 416.705 kb on + strandat 416.705 kb on + strandat 416.706 kb on - strandat 416.706 kb on - strandat 416.706 kb on - strandat 416.721 kb on + strandat 416.728 kb on + strandat 416.728 kb on + strandat 416.760 kb on + strandat 416.869 kb on + strand, within PS417_01885at 416.870 kb on - strand, within PS417_01885at 416.870 kb on - strand, within PS417_01885at 417.132 kb on + strand, within PS417_01885at 417.621 kb on + strand, within PS417_01885at 417.622 kb on - strand, within PS417_01885at 417.806 kb on + strandat 417.807 kb on - strandat 417.824 kb on + strandat 417.825 kb on - strandat 417.868 kb on + strand, within PS417_01890at 417.868 kb on + strand, within PS417_01890at 417.868 kb on + strand, within PS417_01890at 417.899 kb on + strand, within PS417_01890at 417.900 kb on - strand, within PS417_01890at 417.914 kb on - strand, within PS417_01890at 418.152 kb on - strand, within PS417_01890at 418.193 kb on + strand, within PS417_01890at 418.194 kb on - strand, within PS417_01890at 418.194 kb on - strand, within PS417_01890at 418.277 kb on - strand, within PS417_01890at 418.304 kb on + strand, within PS417_01890at 418.304 kb on + strand, within PS417_01890at 418.307 kb on + strand, within PS417_01890at 418.436 kb on + strandat 418.436 kb on + strandat 418.437 kb on - strandat 418.437 kb on - strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.470 kb on - strandat 418.470 kb on - strandat 418.470 kb on - strandat 418.610 kb on + strandat 418.611 kb on - strandat 418.652 kb on + strand, within PS417_01895at 418.652 kb on + strand, within PS417_01895at 418.652 kb on + strand, within PS417_01895

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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415,783 - -0.9
415,783 - -1.1
415,817 - -0.8
415,831 - +0.7
415,855 + -0.4
415,855 + +0.2
415,855 + -1.4
415,856 - -0.1
415,856 - +0.2
415,936 - +0.2
415,936 - -0.2
416,049 + PS417_01875 0.44 +0.3
416,087 + PS417_01875 0.58 +0.7
416,289 - +1.8
416,367 + PS417_01880 0.14 +0.1
416,368 - PS417_01880 0.14 +0.1
416,411 - PS417_01880 0.24 -0.1
416,547 + PS417_01880 0.57 -0.3
416,590 - PS417_01880 0.67 -0.1
416,705 + -1.1
416,705 + +0.3
416,706 - -0.0
416,706 - +0.4
416,706 - -0.0
416,721 + -0.0
416,728 + +0.6
416,728 + +0.2
416,760 + -0.6
416,869 + PS417_01885 0.13 -0.9
416,870 - PS417_01885 0.13 -0.8
416,870 - PS417_01885 0.13 -0.3
417,132 + PS417_01885 0.40 -0.5
417,621 + PS417_01885 0.89 -1.8
417,622 - PS417_01885 0.89 +0.3
417,806 + +0.1
417,807 - -0.6
417,824 + +0.0
417,825 - +1.2
417,868 + PS417_01890 0.10 -0.1
417,868 + PS417_01890 0.10 -0.9
417,868 + PS417_01890 0.10 +0.0
417,899 + PS417_01890 0.15 +1.0
417,900 - PS417_01890 0.15 +0.2
417,914 - PS417_01890 0.18 +0.7
418,152 - PS417_01890 0.56 -0.5
418,193 + PS417_01890 0.62 +1.6
418,194 - PS417_01890 0.63 -1.6
418,194 - PS417_01890 0.63 -0.3
418,277 - PS417_01890 0.76 -0.2
418,304 + PS417_01890 0.80 -0.2
418,304 + PS417_01890 0.80 +0.2
418,307 + PS417_01890 0.81 +0.5
418,436 + +0.0
418,436 + -1.0
418,437 - -0.6
418,437 - -0.9
418,469 + +0.4
418,469 + +0.6
418,469 + +0.3
418,469 + -0.6
418,469 + -1.2
418,469 + +0.2
418,469 + -0.3
418,469 + +0.8
418,469 + +0.2
418,470 - -2.5
418,470 - +0.0
418,470 - -0.5
418,610 + -0.2
418,611 - +0.7
418,652 + PS417_01895 0.12 +0.8
418,652 + PS417_01895 0.12 +0.7
418,652 + PS417_01895 0.12 -0.9

Or see this region's nucleotide sequence