Strain Fitness in Pseudomonas simiae WCS417 around PS417_14870
Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 2 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,247,713 | - | PS417_14865 | 0.36 | +0.5 | |
3,247,713 | - | PS417_14865 | 0.36 | -0.1 | |
3,247,713 | - | PS417_14865 | 0.36 | +0.6 | |
3,247,713 | - | PS417_14865 | 0.36 | +0.0 | |
3,247,713 | - | PS417_14865 | 0.36 | +0.1 | |
3,247,889 | + | PS417_14865 | 0.49 | +0.3 | |
3,247,889 | + | PS417_14865 | 0.49 | -0.2 | |
3,247,889 | + | PS417_14865 | 0.49 | -0.1 | |
3,247,889 | + | PS417_14865 | 0.49 | +0.8 | |
3,248,573 | + | -0.5 | |||
3,248,573 | + | -0.8 | |||
3,248,573 | + | +0.1 | |||
3,248,574 | - | -0.5 | |||
3,248,574 | - | +0.5 | |||
3,248,574 | - | +0.0 | |||
3,248,599 | + | -2.5 | |||
3,248,665 | - | -0.5 | |||
3,248,976 | - | PS417_14870 | 0.36 | -0.6 | |
3,249,068 | + | PS417_14870 | 0.46 | -0.9 | |
3,249,072 | + | PS417_14870 | 0.47 | -0.5 | |
3,249,072 | + | PS417_14870 | 0.47 | -0.5 | |
3,249,072 | + | PS417_14870 | 0.47 | -0.3 | |
3,249,328 | + | PS417_14870 | 0.75 | -1.4 | |
3,249,794 | - | PS417_14875 | 0.45 | -0.2 | |
3,249,968 | - | PS417_14875 | 0.77 | +0.2 | |
3,250,034 | - | PS417_14875 | 0.88 | -0.9 | |
3,250,060 | + | +0.3 | |||
3,250,061 | - | +0.2 | |||
3,250,099 | - | +1.0 | |||
3,250,099 | - | +0.3 | |||
3,250,099 | - | -1.3 | |||
3,250,193 | + | +1.3 | |||
3,250,344 | - | PS417_14880 | 0.23 | +0.0 |
Or see this region's nucleotide sequence