Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13890 and PS417_13895 overlap by 7 nucleotides PS417_13895 and PS417_13900 overlap by 4 nucleotides PS417_13900 and PS417_13905 are separated by 15 nucleotides
PS417_13890: PS417_13890 - histidine kinase, at 3,051,751 to 3,052,944
_13890
PS417_13895: PS417_13895 - chemotaxis protein CheB, at 3,052,938 to 3,053,543
_13895
PS417_13900: PS417_13900 - chemotaxis protein CheR, at 3,053,540 to 3,054,355
_13900
PS417_13905: PS417_13905 - chemotaxis protein CheY, at 3,054,371 to 3,057,874
_13905
Position (kb)
3052
3053
3054 Strain fitness (log2 ratio)
-2
-1
0
1 at 3052.402 kb on - strand, within PS417_13890 at 3052.846 kb on + strand at 3052.847 kb on - strand at 3052.935 kb on + strand at 3052.936 kb on - strand at 3052.939 kb on + strand at 3052.940 kb on - strand at 3052.940 kb on - strand at 3052.952 kb on - strand at 3053.075 kb on + strand, within PS417_13895 at 3053.075 kb on + strand, within PS417_13895 at 3053.164 kb on + strand, within PS417_13895 at 3053.165 kb on - strand, within PS417_13895 at 3053.503 kb on - strand at 3053.503 kb on - strand at 3053.543 kb on + strand at 3053.747 kb on + strand, within PS417_13900 at 3053.835 kb on + strand, within PS417_13900 at 3053.838 kb on + strand, within PS417_13900 at 3053.838 kb on + strand, within PS417_13900 at 3053.838 kb on + strand, within PS417_13900 at 3053.874 kb on + strand, within PS417_13900 at 3053.886 kb on + strand, within PS417_13900 at 3054.297 kb on + strand at 3054.373 kb on - strand at 3054.447 kb on + strand at 3054.447 kb on + strand at 3054.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 3,052,402 - PS417_13890 0.55 -0.7 3,052,846 + +1.0 3,052,847 - +1.3 3,052,935 + -0.2 3,052,936 - -0.7 3,052,939 + +0.5 3,052,940 - -0.1 3,052,940 - +0.5 3,052,952 - +0.5 3,053,075 + PS417_13895 0.23 -0.5 3,053,075 + PS417_13895 0.23 -0.1 3,053,164 + PS417_13895 0.37 -1.0 3,053,165 - PS417_13895 0.37 -1.8 3,053,503 - -0.6 3,053,503 - -0.1 3,053,543 + +0.9 3,053,747 + PS417_13900 0.25 +0.2 3,053,835 + PS417_13900 0.36 -0.2 3,053,838 + PS417_13900 0.37 -0.6 3,053,838 + PS417_13900 0.37 +0.2 3,053,838 + PS417_13900 0.37 -0.1 3,053,874 + PS417_13900 0.41 -0.0 3,053,886 + PS417_13900 0.42 +0.3 3,054,297 + +0.7 3,054,373 - +0.0 3,054,447 + -1.4 3,054,447 + -0.5 3,054,448 - -0.0
Or see this region's nucleotide sequence