Strain Fitness in Pseudomonas simiae WCS417 around PS417_13175
Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 2 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,877,637 | + | PS417_13170 | 0.24 | -0.3 | |
2,877,666 | + | PS417_13170 | 0.26 | +0.7 | |
2,877,666 | + | PS417_13170 | 0.26 | -0.7 | |
2,877,666 | + | PS417_13170 | 0.26 | -1.1 | |
2,877,666 | + | PS417_13170 | 0.26 | +0.3 | |
2,877,667 | - | PS417_13170 | 0.27 | -0.2 | |
2,877,827 | - | PS417_13170 | 0.40 | +1.6 | |
2,877,971 | - | PS417_13170 | 0.52 | -1.6 | |
2,878,063 | + | PS417_13170 | 0.59 | +0.5 | |
2,878,199 | - | PS417_13170 | 0.71 | -1.0 | |
2,878,450 | + | +0.0 | |||
2,878,451 | - | -0.7 | |||
2,878,538 | + | +0.1 | |||
2,878,634 | + | -0.1 | |||
2,878,643 | + | -0.5 | |||
2,878,889 | + | PS417_13175 | 0.39 | -1.0 | |
2,878,890 | - | PS417_13175 | 0.39 | -0.5 | |
2,878,890 | - | PS417_13175 | 0.39 | -0.7 | |
2,879,321 | + | -0.3 | |||
2,879,413 | + | +0.3 | |||
2,879,414 | - | -0.6 | |||
2,879,418 | - | +2.2 | |||
2,879,418 | - | -1.2 | |||
2,879,418 | - | +0.4 | |||
2,879,425 | + | +0.1 | |||
2,879,609 | - | +0.6 | |||
2,880,033 | - | PS417_13180 | 0.46 | -0.2 | |
2,880,033 | - | PS417_13180 | 0.46 | -0.2 | |
2,880,225 | - | PS417_13180 | 0.65 | +0.0 |
Or see this region's nucleotide sequence