Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04275 and PS417_04280 are separated by 48 nucleotides PS417_04280 and PS417_04285 are separated by 16 nucleotides
PS417_04275: PS417_04275 - hypothetical protein, at 956,859 to 960,674
_04275
PS417_04280: PS417_04280 - carbon-nitrogen hydrolase, at 960,723 to 961,571
_04280
PS417_04285: PS417_04285 - protease TldD, at 961,588 to 963,030
_04285
Position (kb) 960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2 at 959.766 kb on + strand, within PS417_04275 at 959.767 kb on - strand, within PS417_04275 at 959.767 kb on - strand, within PS417_04275 at 959.767 kb on - strand, within PS417_04275 at 960.036 kb on + strand, within PS417_04275 at 960.036 kb on + strand, within PS417_04275 at 960.159 kb on + strand, within PS417_04275 at 960.159 kb on + strand, within PS417_04275 at 960.160 kb on - strand, within PS417_04275 at 960.160 kb on - strand, within PS417_04275 at 960.160 kb on - strand, within PS417_04275 at 960.334 kb on - strand at 960.334 kb on - strand at 960.497 kb on + strand at 960.498 kb on - strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.687 kb on + strand at 960.687 kb on + strand at 960.687 kb on + strand at 960.687 kb on + strand at 960.688 kb on - strand at 960.833 kb on - strand, within PS417_04280 at 960.953 kb on - strand, within PS417_04280 at 960.953 kb on - strand, within PS417_04280 at 961.129 kb on - strand, within PS417_04280 at 961.195 kb on - strand, within PS417_04280 at 961.195 kb on - strand, within PS417_04280 at 961.339 kb on - strand, within PS417_04280 at 961.339 kb on - strand, within PS417_04280 at 961.390 kb on - strand, within PS417_04280 at 961.575 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.583 kb on + strand at 961.584 kb on - strand at 961.584 kb on - strand at 961.584 kb on - strand at 961.587 kb on + strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.588 kb on - strand at 961.709 kb on - strand at 961.709 kb on - strand at 961.831 kb on + strand, within PS417_04285 at 961.951 kb on + strand, within PS417_04285 at 961.952 kb on - strand, within PS417_04285 at 962.228 kb on - strand, within PS417_04285 at 962.422 kb on + strand, within PS417_04285
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml remove 959,766 + PS417_04275 0.76 -0.0 959,767 - PS417_04275 0.76 +0.4 959,767 - PS417_04275 0.76 +0.2 959,767 - PS417_04275 0.76 -0.1 960,036 + PS417_04275 0.83 -0.7 960,036 + PS417_04275 0.83 -0.4 960,159 + PS417_04275 0.86 -0.0 960,159 + PS417_04275 0.86 +0.2 960,160 - PS417_04275 0.87 -0.4 960,160 - PS417_04275 0.87 -0.3 960,160 - PS417_04275 0.87 -0.0 960,334 - +1.4 960,334 - +0.9 960,497 + +0.7 960,498 - -0.1 960,606 + -0.4 960,606 + -0.1 960,606 + -0.2 960,606 + -0.4 960,606 + -0.5 960,606 + -0.7 960,607 - -0.4 960,607 - -0.7 960,607 - -0.7 960,607 - +0.3 960,607 - +0.2 960,687 + +0.4 960,687 + +0.2 960,687 + +0.3 960,687 + +0.8 960,688 - +0.1 960,833 - PS417_04280 0.13 -0.0 960,953 - PS417_04280 0.27 -1.4 960,953 - PS417_04280 0.27 -0.9 961,129 - PS417_04280 0.48 -0.6 961,195 - PS417_04280 0.56 -1.9 961,195 - PS417_04280 0.56 -0.4 961,339 - PS417_04280 0.73 -0.2 961,339 - PS417_04280 0.73 -0.0 961,390 - PS417_04280 0.79 -0.4 961,575 + +0.3 961,583 + -0.8 961,583 + +0.8 961,583 + +0.3 961,583 + +1.6 961,583 + -0.3 961,584 - +1.8 961,584 - +1.1 961,584 - +1.8 961,587 + -0.2 961,588 - -0.5 961,588 - +0.1 961,588 - -0.2 961,588 - +0.1 961,588 - -0.8 961,588 - -0.7 961,709 - -0.0 961,709 - -0.8 961,831 + PS417_04285 0.17 -0.7 961,951 + PS417_04285 0.25 +0.4 961,952 - PS417_04285 0.25 -0.4 962,228 - PS417_04285 0.44 +0.4 962,422 + PS417_04285 0.58 -0.3
Or see this region's nucleotide sequence