Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02860 and PS417_02865 are separated by 152 nucleotides PS417_02865 and PS417_02870 are separated by 115 nucleotides
PS417_02860: PS417_02860 - TonB-dependent receptor, at 652,340 to 654,448
_02860
PS417_02865: PS417_02865 - peptidase, at 654,601 to 655,983
_02865
PS417_02870: PS417_02870 - TonB-dependent receptor, at 656,099 to 658,168
_02870
Position (kb) 654
655
656 Strain fitness (log2 ratio) -1
0
1 at 653.638 kb on - strand, within PS417_02860 at 653.638 kb on - strand, within PS417_02860 at 653.848 kb on - strand, within PS417_02860 at 653.905 kb on - strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.088 kb on - strand, within PS417_02860 at 654.106 kb on - strand, within PS417_02860 at 654.439 kb on - strand at 654.439 kb on - strand at 654.439 kb on - strand at 654.523 kb on - strand at 654.646 kb on + strand at 654.941 kb on + strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 655.329 kb on - strand, within PS417_02865 at 655.619 kb on + strand, within PS417_02865 at 655.739 kb on + strand at 655.740 kb on - strand, within PS417_02865 at 655.842 kb on - strand, within PS417_02865 at 655.874 kb on + strand at 655.875 kb on - strand at 656.415 kb on + strand, within PS417_02870 at 656.653 kb on - strand, within PS417_02870 at 656.826 kb on + strand, within PS417_02870
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml remove 653,638 - PS417_02860 0.62 +0.6 653,638 - PS417_02860 0.62 -0.6 653,848 - PS417_02860 0.72 +0.3 653,905 - PS417_02860 0.74 +0.0 654,087 + PS417_02860 0.83 -0.2 654,087 + PS417_02860 0.83 +0.0 654,088 - PS417_02860 0.83 +0.2 654,106 - PS417_02860 0.84 -0.6 654,439 - +0.2 654,439 - +0.2 654,439 - +0.5 654,523 - -0.9 654,646 + -1.2 654,941 + PS417_02865 0.25 -0.7 654,942 - PS417_02865 0.25 -1.1 654,942 - PS417_02865 0.25 -0.7 655,329 - PS417_02865 0.53 +1.5 655,619 + PS417_02865 0.74 +0.1 655,739 + -0.4 655,740 - PS417_02865 0.82 +0.1 655,842 - PS417_02865 0.90 -0.9 655,874 + +0.2 655,875 - -0.1 656,415 + PS417_02870 0.15 -0.4 656,653 - PS417_02870 0.27 +0.6 656,826 + PS417_02870 0.35 -0.3
Or see this region's nucleotide sequence