Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17580 and PS417_17585 are separated by 16 nucleotides PS417_17585 and PS417_17590 are separated by 244 nucleotides
PS417_17580: PS417_17580 - citrulline utilization hydrolase (from data) , at 3,838,488 to 3,839,414
_17580
PS417_17585: PS417_17585 - ornithine cyclodeaminase, at 3,839,431 to 3,840,477
_17585
PS417_17590: PS417_17590 - ABC transporter substrate-binding protein, at 3,840,722 to 3,841,498
_17590
Position (kb)
3839
3840
3841 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3838.630 kb on - strand, within PS417_17580 at 3838.630 kb on - strand, within PS417_17580 at 3838.630 kb on - strand, within PS417_17580 at 3838.930 kb on - strand, within PS417_17580 at 3839.324 kb on - strand at 3839.464 kb on + strand at 3839.515 kb on + strand at 3839.531 kb on - strand at 3839.638 kb on + strand, within PS417_17585 at 3839.639 kb on - strand, within PS417_17585 at 3840.312 kb on - strand, within PS417_17585 at 3840.346 kb on + strand, within PS417_17585 at 3840.346 kb on + strand, within PS417_17585 at 3840.701 kb on + strand at 3840.708 kb on + strand at 3840.711 kb on - strand at 3841.057 kb on + strand, within PS417_17590 at 3841.223 kb on + strand, within PS417_17590 at 3841.223 kb on + strand, within PS417_17590 at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.446 kb on - strand at 3841.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml remove 3,838,630 - PS417_17580 0.15 -3.6 3,838,630 - PS417_17580 0.15 +0.1 3,838,630 - PS417_17580 0.15 -0.0 3,838,930 - PS417_17580 0.48 -0.1 3,839,324 - -0.2 3,839,464 + -1.2 3,839,515 + -0.4 3,839,531 - +0.1 3,839,638 + PS417_17585 0.20 -0.3 3,839,639 - PS417_17585 0.20 -0.8 3,840,312 - PS417_17585 0.84 -1.5 3,840,346 + PS417_17585 0.87 +0.0 3,840,346 + PS417_17585 0.87 +1.1 3,840,701 + +1.4 3,840,708 + +0.6 3,840,711 - -1.5 3,841,057 + PS417_17590 0.43 +0.3 3,841,223 + PS417_17590 0.64 +1.5 3,841,223 + PS417_17590 0.64 -1.9 3,841,445 + -0.4 3,841,445 + -1.1 3,841,445 + +0.3 3,841,445 + +1.0 3,841,446 - +0.4 3,841,467 - +0.1
Or see this region's nucleotide sequence