Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17315 and PS417_17320 are separated by 591 nucleotides PS417_17320 and PS417_17325 are separated by 161 nucleotides
PS417_17315: PS417_17315 - nitrate reductase, at 3,781,943 to 3,783,430
_17315
PS417_17320: PS417_17320 - phenylhydantoinase, at 3,784,022 to 3,785,461
_17320
PS417_17325: PS417_17325 - dihydropyrimidine dehydrogenase, at 3,785,623 to 3,786,990
_17325
Position (kb)
3784
3785
3786 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3783.219 kb on + strand, within PS417_17315 at 3783.244 kb on + strand, within PS417_17315 at 3783.246 kb on + strand, within PS417_17315 at 3783.246 kb on + strand at 3783.246 kb on + strand, within PS417_17315 at 3783.247 kb on - strand, within PS417_17315 at 3783.247 kb on - strand, within PS417_17315 at 3783.346 kb on - strand at 3783.387 kb on + strand at 3783.455 kb on + strand at 3783.496 kb on - strand at 3783.496 kb on - strand at 3783.981 kb on + strand at 3783.981 kb on + strand at 3784.101 kb on + strand at 3784.199 kb on - strand, within PS417_17320 at 3784.379 kb on + strand, within PS417_17320 at 3784.380 kb on - strand, within PS417_17320 at 3784.799 kb on + strand, within PS417_17320 at 3785.308 kb on + strand, within PS417_17320 at 3785.379 kb on + strand at 3785.379 kb on + strand at 3785.380 kb on - strand at 3785.380 kb on - strand at 3785.380 kb on - strand at 3785.394 kb on - strand at 3785.749 kb on + strand at 3785.750 kb on - strand at 3785.750 kb on - strand at 3785.983 kb on + strand, within PS417_17325 at 3785.984 kb on - strand, within PS417_17325 at 3785.984 kb on - strand at 3785.984 kb on - strand, within PS417_17325 at 3786.178 kb on + strand, within PS417_17325 at 3786.178 kb on + strand, within PS417_17325 at 3786.394 kb on + strand, within PS417_17325 at 3786.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml remove 3,783,219 + PS417_17315 0.86 -0.0 3,783,244 + PS417_17315 0.87 +0.6 3,783,246 + PS417_17315 0.88 -0.8 3,783,246 + +1.7 3,783,246 + PS417_17315 0.88 +0.0 3,783,247 - PS417_17315 0.88 +0.4 3,783,247 - PS417_17315 0.88 +0.8 3,783,346 - -0.0 3,783,387 + +0.3 3,783,455 + +0.7 3,783,496 - +0.9 3,783,496 - -1.6 3,783,981 + -0.1 3,783,981 + -0.4 3,784,101 + -0.7 3,784,199 - PS417_17320 0.12 +0.0 3,784,379 + PS417_17320 0.25 -0.2 3,784,380 - PS417_17320 0.25 -2.8 3,784,799 + PS417_17320 0.54 -0.3 3,785,308 + PS417_17320 0.89 -1.3 3,785,379 + -0.4 3,785,379 + -1.0 3,785,380 - -0.4 3,785,380 - -0.7 3,785,380 - -0.6 3,785,394 - +0.0 3,785,749 + -0.4 3,785,750 - -1.3 3,785,750 - -0.4 3,785,983 + PS417_17325 0.26 -0.4 3,785,984 - PS417_17325 0.26 +1.1 3,785,984 - +0.4 3,785,984 - PS417_17325 0.26 -0.2 3,786,178 + PS417_17325 0.41 -0.6 3,786,178 + PS417_17325 0.41 +0.4 3,786,394 + PS417_17325 0.56 +0.6 3,786,394 + +1.4
Or see this region's nucleotide sequence