Strain Fitness in Pseudomonas simiae WCS417 around PS417_07210

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07205 and PS417_07210 are separated by 13 nucleotidesPS417_07210 and PS417_07215 are separated by 11 nucleotides PS417_07205: PS417_07205 - LysR family transcriptional regulator, at 1,590,143 to 1,591,462 _07205 PS417_07210: PS417_07210 - allantoate amidohydrolase, at 1,591,476 to 1,592,705 _07210 PS417_07215: PS417_07215 - acetylpolyamine aminohydrolase, at 1,592,717 to 1,593,745 _07215 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -1 0 1at 1590.684 kb on + strand, within PS417_07205at 1590.684 kb on + strand, within PS417_07205at 1590.684 kb on + strand, within PS417_07205at 1590.684 kb on + strandat 1590.685 kb on - strand, within PS417_07205at 1590.687 kb on + strand, within PS417_07205at 1590.688 kb on - strandat 1590.688 kb on - strandat 1590.918 kb on - strand, within PS417_07205at 1591.089 kb on + strand, within PS417_07205at 1591.196 kb on + strand, within PS417_07205at 1591.197 kb on - strand, within PS417_07205at 1591.247 kb on + strand, within PS417_07205at 1591.335 kb on - strandat 1591.367 kb on + strandat 1591.368 kb on - strandat 1591.468 kb on + strandat 1591.469 kb on - strandat 1591.469 kb on - strandat 1591.474 kb on + strandat 1591.474 kb on + strandat 1591.475 kb on - strandat 1591.759 kb on - strand, within PS417_07210at 1591.766 kb on - strand, within PS417_07210at 1591.766 kb on - strandat 1591.983 kb on + strand, within PS417_07210at 1592.132 kb on + strand, within PS417_07210at 1592.133 kb on - strand, within PS417_07210at 1592.184 kb on + strand, within PS417_07210at 1592.185 kb on - strand, within PS417_07210at 1592.257 kb on + strand, within PS417_07210at 1592.258 kb on - strand, within PS417_07210at 1592.266 kb on + strand, within PS417_07210at 1592.267 kb on - strand, within PS417_07210at 1592.267 kb on - strand, within PS417_07210at 1592.480 kb on - strand, within PS417_07210at 1592.662 kb on + strandat 1592.765 kb on + strandat 1592.766 kb on - strandat 1592.766 kb on - strandat 1592.766 kb on - strandat 1592.768 kb on + strandat 1592.768 kb on + strandat 1592.769 kb on - strandat 1592.873 kb on + strand, within PS417_07215at 1593.096 kb on - strand, within PS417_07215at 1593.195 kb on - strand, within PS417_07215at 1593.218 kb on + strand, within PS417_07215at 1593.218 kb on + strand, within PS417_07215at 1593.347 kb on + strand, within PS417_07215at 1593.348 kb on - strand, within PS417_07215at 1593.348 kb on - strand, within PS417_07215at 1593.559 kb on + strand, within PS417_07215at 1593.564 kb on - strand, within PS417_07215at 1593.564 kb on - strand, within PS417_07215at 1593.594 kb on + strand, within PS417_07215

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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1,590,684 + PS417_07205 0.41 -0.0
1,590,684 + PS417_07205 0.41 +0.5
1,590,684 + PS417_07205 0.41 -0.0
1,590,684 + -1.0
1,590,685 - PS417_07205 0.41 +0.1
1,590,687 + PS417_07205 0.41 +0.4
1,590,688 - +0.0
1,590,688 - -0.4
1,590,918 - PS417_07205 0.59 -0.2
1,591,089 + PS417_07205 0.72 +0.6
1,591,196 + PS417_07205 0.80 +0.5
1,591,197 - PS417_07205 0.80 -0.7
1,591,247 + PS417_07205 0.84 +0.6
1,591,335 - -0.1
1,591,367 + -0.5
1,591,368 - -0.8
1,591,468 + -1.3
1,591,469 - +0.5
1,591,469 - +1.2
1,591,474 + +0.0
1,591,474 + +0.5
1,591,475 - +0.2
1,591,759 - PS417_07210 0.23 -0.3
1,591,766 - PS417_07210 0.24 +0.0
1,591,766 - +0.6
1,591,983 + PS417_07210 0.41 -0.1
1,592,132 + PS417_07210 0.53 -0.8
1,592,133 - PS417_07210 0.53 -0.1
1,592,184 + PS417_07210 0.58 -1.0
1,592,185 - PS417_07210 0.58 -0.2
1,592,257 + PS417_07210 0.63 +0.6
1,592,258 - PS417_07210 0.64 -0.4
1,592,266 + PS417_07210 0.64 -0.4
1,592,267 - PS417_07210 0.64 -0.7
1,592,267 - PS417_07210 0.64 -0.4
1,592,480 - PS417_07210 0.82 -0.9
1,592,662 + -1.3
1,592,765 + +0.2
1,592,766 - +0.0
1,592,766 - -1.0
1,592,766 - -0.8
1,592,768 + -0.1
1,592,768 + -0.9
1,592,769 - -0.6
1,592,873 + PS417_07215 0.15 -0.5
1,593,096 - PS417_07215 0.37 +0.2
1,593,195 - PS417_07215 0.46 -0.6
1,593,218 + PS417_07215 0.49 +1.3
1,593,218 + PS417_07215 0.49 +1.0
1,593,347 + PS417_07215 0.61 -0.5
1,593,348 - PS417_07215 0.61 -0.2
1,593,348 - PS417_07215 0.61 -0.4
1,593,559 + PS417_07215 0.82 -0.3
1,593,564 - PS417_07215 0.82 +0.6
1,593,564 - PS417_07215 0.82 -0.3
1,593,594 + PS417_07215 0.85 -0.5

Or see this region's nucleotide sequence