Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04140 and PS417_04145 are separated by 248 nucleotides PS417_04145 and PS417_04150 are separated by 14 nucleotides PS417_04150 and PS417_04155 are separated by 266 nucleotides PS417_04155 and PS417_04160 overlap by 1 nucleotides
PS417_04140: PS417_04140 - aldo/keto reductase, at 931,016 to 932,056
_04140
PS417_04145: PS417_04145 - 50S ribosomal protein L13, at 932,305 to 932,733
_04145
PS417_04150: PS417_04150 - 30S ribosomal protein S9, at 932,748 to 933,140
_04150
PS417_04155: PS417_04155 - ubiquinol-cytochrome C reductase, at 933,407 to 934,000
_04155
PS417_04160: PS417_04160 - cytochrome B, at 934,000 to 935,211
_04160
Position (kb)
932
933
934 Strain fitness (log2 ratio)
-1
0
1
2 at 931.766 kb on - strand, within PS417_04140 at 931.768 kb on - strand, within PS417_04140 at 931.768 kb on - strand, within PS417_04140 at 931.855 kb on - strand, within PS417_04140 at 931.855 kb on - strand, within PS417_04140 at 931.872 kb on + strand at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.873 kb on - strand, within PS417_04140 at 931.873 kb on - strand, within PS417_04140 at 932.085 kb on - strand at 932.118 kb on + strand at 933.209 kb on + strand at 933.210 kb on - strand at 933.210 kb on - strand at 933.210 kb on - strand at 933.255 kb on + strand at 933.256 kb on - strand at 933.257 kb on + strand at 933.258 kb on - strand at 933.258 kb on - strand at 933.260 kb on + strand at 933.260 kb on + strand at 933.260 kb on + strand at 933.260 kb on + strand at 933.261 kb on - strand at 933.261 kb on - strand at 933.301 kb on + strand at 933.343 kb on + strand at 933.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 931,766 - PS417_04140 0.72 +0.7 931,768 - PS417_04140 0.72 -0.6 931,768 - PS417_04140 0.72 +0.2 931,855 - PS417_04140 0.81 -0.2 931,855 - PS417_04140 0.81 -0.1 931,872 + +2.0 931,872 + PS417_04140 0.82 +0.4 931,872 + PS417_04140 0.82 -0.2 931,872 + PS417_04140 0.82 +0.2 931,872 + PS417_04140 0.82 -0.3 931,872 + PS417_04140 0.82 +0.4 931,873 - PS417_04140 0.82 +0.4 931,873 - PS417_04140 0.82 -0.6 932,085 - -0.4 932,118 + -0.3 933,209 + +1.0 933,210 - -0.2 933,210 - +1.4 933,210 - -0.4 933,255 + -0.0 933,256 - -0.3 933,257 + -1.2 933,258 - +0.2 933,258 - -0.8 933,260 + -0.8 933,260 + -0.5 933,260 + +0.8 933,260 + +0.8 933,261 - -0.0 933,261 - +0.2 933,301 + +0.7 933,343 + +0.3 933,361 + +2.0
Or see this region's nucleotide sequence