Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03435 and PS417_03445 are separated by 566 nucleotides PS417_03445 and PS417_03450 are separated by 191 nucleotides PS417_03450 and PS417_03455 are separated by 263 nucleotides
PS417_03435: PS417_03435 - cytochrome P450, at 790,323 to 792,323
_03435
PS417_03445: PS417_03445 - tRNA-Met, at 792,890 to 792,966
_03445
PS417_03450: PS417_03450 - RNA polymerase sigma factor, at 793,158 to 793,709
_03450
PS417_03455: PS417_03455 - type III secretion protein, at 793,973 to 795,037
_03455
Position (kb) 793
794 Strain fitness (log2 ratio) -1
0
1
2 at 792.207 kb on + strand at 792.466 kb on - strand at 792.466 kb on - strand at 792.466 kb on - strand at 792.633 kb on + strand at 792.634 kb on - strand at 792.634 kb on - strand at 793.235 kb on + strand, within PS417_03450 at 793.294 kb on + strand, within PS417_03450 at 793.488 kb on - strand, within PS417_03450 at 793.555 kb on + strand, within PS417_03450 at 793.727 kb on - strand at 793.762 kb on + strand at 793.856 kb on + strand at 793.856 kb on + strand at 793.856 kb on + strand at 794.321 kb on + strand, within PS417_03455 at 794.321 kb on + strand, within PS417_03455 at 794.322 kb on - strand, within PS417_03455
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 792,207 + -1.4 792,466 - +2.0 792,466 - +0.4 792,466 - +1.3 792,633 + +0.4 792,634 - +0.0 792,634 - -0.4 793,235 + PS417_03450 0.14 -0.2 793,294 + PS417_03450 0.25 +0.2 793,488 - PS417_03450 0.60 +0.8 793,555 + PS417_03450 0.72 -0.3 793,727 - +1.2 793,762 + -0.7 793,856 + -0.5 793,856 + -0.1 793,856 + +0.0 794,321 + PS417_03455 0.33 -1.2 794,321 + PS417_03455 0.33 +1.2 794,322 - PS417_03455 0.33 +0.3
Or see this region's nucleotide sequence