Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27815 and PS417_27820 are separated by 10 nucleotides PS417_27820 and PS417_27825 are separated by 167 nucleotides PS417_27825 and PS417_27830 are separated by 60 nucleotides
PS417_27815: PS417_27815 - hypothetical protein, at 5,997,097 to 5,997,960
_27815
PS417_27820: PS417_27820 - guanylate kinase, at 5,997,971 to 5,998,591
_27820
PS417_27825: PS417_27825 - DNA-directed RNA polymerase subunit omega, at 5,998,759 to 5,999,022
_27825
PS417_27830: PS417_27830 - (p)ppGpp synthetase, at 5,999,083 to 6,001,188
_27830
Position (kb)
5997
5998
5999 Strain fitness (log2 ratio)
-1
0
1
2 at 5996.984 kb on - strand at 5997.036 kb on - strand at 5997.053 kb on + strand at 5997.264 kb on + strand, within PS417_27815 at 5997.264 kb on + strand at 5997.858 kb on + strand, within PS417_27815 at 5997.858 kb on + strand, within PS417_27815 at 5998.623 kb on + strand at 5998.623 kb on + strand at 5998.623 kb on + strand at 5998.624 kb on - strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.041 kb on + strand at 5999.093 kb on + strand at 5999.093 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 5,996,984 - +1.1 5,997,036 - +0.2 5,997,053 + +0.2 5,997,264 + PS417_27815 0.19 -0.1 5,997,264 + +2.2 5,997,858 + PS417_27815 0.88 +2.2 5,997,858 + PS417_27815 0.88 +0.1 5,998,623 + -1.0 5,998,623 + -0.6 5,998,623 + +0.2 5,998,624 - +1.2 5,999,026 + -0.3 5,999,026 + -0.5 5,999,026 + -0.4 5,999,026 + -0.1 5,999,026 + -0.7 5,999,041 + +0.2 5,999,093 + -0.6 5,999,093 + +0.6
Or see this region's nucleotide sequence