Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02410 and PS417_02415 are separated by 133 nucleotides PS417_02415 and PS417_02420 are separated by 123 nucleotides PS417_02420 and PS417_02425 are separated by 15 nucleotides
PS417_02410: PS417_02410 - histidine kinase, at 551,777 to 553,279
_02410
PS417_02415: PS417_02415 - phosphoserine phosphatase, at 553,413 to 554,627
_02415
PS417_02420: PS417_02420 - phosphatidylserine decarboxylase, at 554,751 to 555,611
_02420
PS417_02425: PS417_02425 - thiosulfate sulfurtransferase, at 555,627 to 556,442
_02425
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 553.320 kb on - strand at 553.595 kb on - strand, within PS417_02415 at 553.622 kb on + strand, within PS417_02415 at 553.622 kb on + strand, within PS417_02415 at 553.623 kb on - strand, within PS417_02415 at 553.766 kb on + strand, within PS417_02415 at 554.316 kb on + strand, within PS417_02415 at 554.317 kb on - strand, within PS417_02415 at 554.707 kb on - strand at 554.759 kb on + strand at 554.760 kb on - strand at 554.760 kb on - strand at 555.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 553,320 - -1.4 553,595 - PS417_02415 0.15 -1.3 553,622 + PS417_02415 0.17 -2.9 553,622 + PS417_02415 0.17 -0.2 553,623 - PS417_02415 0.17 +0.5 553,766 + PS417_02415 0.29 -0.5 554,316 + PS417_02415 0.74 -2.0 554,317 - PS417_02415 0.74 -0.2 554,707 - -0.2 554,759 + +0.9 554,760 - -0.8 554,760 - -0.2 555,622 - +0.2
Or see this region's nucleotide sequence