Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23755 and PS417_23760 are separated by 4 nucleotides PS417_23760 and PS417_23765 overlap by 4 nucleotides PS417_23765 and PS417_23770 are separated by 142 nucleotides
PS417_23755: PS417_23755 - membrane protein, at 5,135,590 to 5,136,081
_23755
PS417_23760: PS417_23760 - DeoR faimly transcriptional regulator, at 5,136,086 to 5,137,348
_23760
PS417_23765: PS417_23765 - hypothetical protein, at 5,137,345 to 5,137,920
_23765
PS417_23770: PS417_23770 - exodeoxyribonuclease V subunit alpha, at 5,138,063 to 5,140,132
_23770
Position (kb) 5136
5137
5138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5135.233 kb on - strand at 5135.251 kb on + strand at 5135.386 kb on + strand at 5135.387 kb on - strand at 5135.505 kb on + strand at 5135.566 kb on + strand at 5135.771 kb on + strand, within PS417_23755 at 5135.772 kb on - strand, within PS417_23755 at 5135.772 kb on - strand, within PS417_23755 at 5136.168 kb on + strand at 5136.168 kb on + strand at 5136.168 kb on + strand at 5136.257 kb on + strand, within PS417_23760 at 5136.258 kb on - strand, within PS417_23760 at 5136.508 kb on - strand, within PS417_23760 at 5136.994 kb on + strand, within PS417_23760 at 5137.176 kb on + strand, within PS417_23760 at 5137.176 kb on + strand, within PS417_23760 at 5137.177 kb on - strand, within PS417_23760 at 5137.219 kb on - strand, within PS417_23760 at 5137.400 kb on - strand at 5137.580 kb on + strand, within PS417_23765 at 5137.580 kb on + strand, within PS417_23765 at 5137.581 kb on - strand, within PS417_23765 at 5137.707 kb on + strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.867 kb on + strand at 5137.868 kb on - strand at 5137.947 kb on - strand at 5138.049 kb on + strand at 5138.050 kb on - strand at 5138.125 kb on + strand at 5138.126 kb on - strand at 5138.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 5,135,233 - +0.5 5,135,251 + +0.4 5,135,386 + -0.3 5,135,387 - -1.1 5,135,505 + +0.3 5,135,566 + +1.4 5,135,771 + PS417_23755 0.37 +0.3 5,135,772 - PS417_23755 0.37 -2.0 5,135,772 - PS417_23755 0.37 -0.2 5,136,168 + +0.4 5,136,168 + -0.1 5,136,168 + -0.0 5,136,257 + PS417_23760 0.14 +0.5 5,136,258 - PS417_23760 0.14 -0.0 5,136,508 - PS417_23760 0.33 +0.3 5,136,994 + PS417_23760 0.72 +1.9 5,137,176 + PS417_23760 0.86 +0.8 5,137,176 + PS417_23760 0.86 +0.6 5,137,177 - PS417_23760 0.86 +0.4 5,137,219 - PS417_23760 0.90 +0.6 5,137,400 - -0.3 5,137,580 + PS417_23765 0.41 +1.0 5,137,580 + PS417_23765 0.41 -0.8 5,137,581 - PS417_23765 0.41 +0.2 5,137,707 + PS417_23765 0.63 -1.0 5,137,708 - PS417_23765 0.63 +0.3 5,137,708 - PS417_23765 0.63 -0.1 5,137,749 - PS417_23765 0.70 +0.9 5,137,749 - PS417_23765 0.70 +0.4 5,137,867 + -0.1 5,137,868 - -0.6 5,137,947 - -1.6 5,138,049 + -0.8 5,138,050 - -0.6 5,138,125 + -1.7 5,138,126 - -2.0 5,138,205 + -1.6
Or see this region's nucleotide sequence