Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22620 and PS417_22625 are separated by 56 nucleotides PS417_22625 and PS417_22630 are separated by 30 nucleotides
PS417_22620: PS417_22620 - pyruvate kinase, at 4,897,398 to 4,898,849
_22620
PS417_22625: PS417_22625 - enoyl-CoA hydratase, at 4,898,906 to 4,899,655
_22625
PS417_22630: PS417_22630 - hypothetical protein, at 4,899,686 to 4,900,618
_22630
Position (kb)
4898
4899
4900 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 4897.966 kb on - strand, within PS417_22620 at 4898.007 kb on + strand, within PS417_22620 at 4898.502 kb on + strand at 4898.502 kb on + strand, within PS417_22620 at 4898.503 kb on - strand, within PS417_22620 at 4898.661 kb on + strand, within PS417_22620 at 4898.662 kb on - strand, within PS417_22620 at 4898.787 kb on + strand at 4898.972 kb on + strand at 4898.973 kb on - strand at 4899.028 kb on + strand, within PS417_22625 at 4899.029 kb on - strand, within PS417_22625 at 4899.303 kb on + strand, within PS417_22625 at 4899.303 kb on + strand, within PS417_22625 at 4899.303 kb on + strand, within PS417_22625 at 4899.304 kb on - strand, within PS417_22625 at 4899.304 kb on - strand, within PS417_22625 at 4899.334 kb on + strand, within PS417_22625 at 4899.334 kb on + strand, within PS417_22625 at 4899.334 kb on + strand, within PS417_22625 at 4899.335 kb on - strand, within PS417_22625 at 4899.409 kb on - strand, within PS417_22625 at 4899.561 kb on + strand, within PS417_22625 at 4899.561 kb on + strand, within PS417_22625 at 4899.561 kb on + strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.792 kb on - strand, within PS417_22630 at 4899.792 kb on - strand, within PS417_22630 at 4899.919 kb on - strand, within PS417_22630 at 4900.068 kb on + strand, within PS417_22630 at 4900.525 kb on - strand at 4900.618 kb on + strand at 4900.618 kb on + strand at 4900.619 kb on - strand at 4900.620 kb on + strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 4,897,966 - PS417_22620 0.39 +6.7 4,898,007 + PS417_22620 0.42 +6.8 4,898,502 + +6.2 4,898,502 + PS417_22620 0.76 +7.3 4,898,503 - PS417_22620 0.76 +6.3 4,898,661 + PS417_22620 0.87 +5.5 4,898,662 - PS417_22620 0.87 +6.4 4,898,787 + +5.0 4,898,972 + +0.1 4,898,973 - +0.4 4,899,028 + PS417_22625 0.16 +0.8 4,899,029 - PS417_22625 0.16 +2.9 4,899,303 + PS417_22625 0.53 +0.1 4,899,303 + PS417_22625 0.53 +0.2 4,899,303 + PS417_22625 0.53 -0.7 4,899,304 - PS417_22625 0.53 -0.5 4,899,304 - PS417_22625 0.53 -2.1 4,899,334 + PS417_22625 0.57 -0.3 4,899,334 + PS417_22625 0.57 -0.1 4,899,334 + PS417_22625 0.57 -0.4 4,899,335 - PS417_22625 0.57 -0.1 4,899,409 - PS417_22625 0.67 +0.0 4,899,561 + PS417_22625 0.87 -0.4 4,899,561 + PS417_22625 0.87 +3.1 4,899,561 + PS417_22625 0.87 +0.0 4,899,562 - PS417_22625 0.87 +0.0 4,899,562 - PS417_22625 0.87 +0.2 4,899,562 - PS417_22625 0.87 +0.1 4,899,562 - PS417_22625 0.87 +1.1 4,899,792 - PS417_22630 0.11 -0.2 4,899,792 - PS417_22630 0.11 -1.8 4,899,919 - PS417_22630 0.25 +1.9 4,900,068 + PS417_22630 0.41 -0.7 4,900,525 - -0.3 4,900,618 + -0.9 4,900,618 + +0.4 4,900,619 - -1.1 4,900,620 + -0.6 4,900,621 - -0.1 4,900,621 - -0.0 4,900,621 - +0.0 4,900,621 - -0.5 4,900,621 - -0.5 4,900,621 - -0.6 4,900,621 - +1.6 4,900,621 - -0.2
Or see this region's nucleotide sequence