Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22605 and PS417_22610 are separated by 23 nucleotides PS417_22610 and PS417_22615 are separated by 225 nucleotides PS417_22615 and PS417_22620 are separated by 173 nucleotides
PS417_22605: PS417_22605 - membrane protein, at 4,894,910 to 4,896,241
_22605
PS417_22610: PS417_22610 - pilus assembly protein PilZ, at 4,896,265 to 4,896,624
_22610
PS417_22615: PS417_22615 - hypothetical protein, at 4,896,850 to 4,897,224
_22615
PS417_22620: PS417_22620 - pyruvate kinase, at 4,897,398 to 4,898,849
_22620
Position (kb) 4896
4897 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4895.361 kb on + strand, within PS417_22605 at 4895.427 kb on + strand, within PS417_22605 at 4895.442 kb on + strand, within PS417_22605 at 4895.726 kb on + strand, within PS417_22605 at 4895.727 kb on - strand, within PS417_22605 at 4895.727 kb on - strand, within PS417_22605 at 4895.813 kb on - strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.844 kb on - strand, within PS417_22605 at 4895.844 kb on - strand, within PS417_22605 at 4895.990 kb on - strand, within PS417_22605 at 4896.262 kb on + strand at 4896.262 kb on + strand at 4896.266 kb on + strand at 4896.267 kb on - strand at 4896.299 kb on + strand at 4896.299 kb on + strand at 4896.300 kb on - strand at 4896.329 kb on + strand, within PS417_22610 at 4896.329 kb on + strand, within PS417_22610 at 4896.368 kb on + strand, within PS417_22610 at 4896.368 kb on + strand, within PS417_22610 at 4896.368 kb on + strand, within PS417_22610 at 4896.568 kb on - strand, within PS417_22610 at 4896.832 kb on - strand at 4896.832 kb on - strand at 4896.834 kb on + strand at 4896.835 kb on - strand at 4896.835 kb on - strand at 4896.944 kb on + strand, within PS417_22615 at 4897.058 kb on + strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.130 kb on + strand, within PS417_22615 at 4897.131 kb on - strand, within PS417_22615 at 4897.324 kb on + strand at 4897.344 kb on + strand at 4897.359 kb on + strand at 4897.359 kb on + strand at 4897.362 kb on + strand at 4897.362 kb on + strand at 4897.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 4,895,361 + PS417_22605 0.34 +0.1 4,895,427 + PS417_22605 0.39 -0.8 4,895,442 + PS417_22605 0.40 -0.3 4,895,726 + PS417_22605 0.61 -0.2 4,895,727 - PS417_22605 0.61 +0.1 4,895,727 - PS417_22605 0.61 -0.7 4,895,813 - PS417_22605 0.68 -0.9 4,895,841 + PS417_22605 0.70 -1.5 4,895,841 + PS417_22605 0.70 +0.2 4,895,841 + PS417_22605 0.70 +0.9 4,895,841 + PS417_22605 0.70 +0.2 4,895,843 + PS417_22605 0.70 -0.0 4,895,843 + PS417_22605 0.70 +1.9 4,895,843 + PS417_22605 0.70 -0.2 4,895,843 + PS417_22605 0.70 +0.5 4,895,843 + PS417_22605 0.70 -0.2 4,895,843 + PS417_22605 0.70 -0.0 4,895,844 - PS417_22605 0.70 +0.3 4,895,844 - PS417_22605 0.70 -1.0 4,895,990 - PS417_22605 0.81 +0.1 4,896,262 + -0.7 4,896,262 + -0.0 4,896,266 + +0.1 4,896,267 - +0.4 4,896,299 + +0.0 4,896,299 + +0.6 4,896,300 - +0.2 4,896,329 + PS417_22610 0.18 -0.3 4,896,329 + PS417_22610 0.18 +0.2 4,896,368 + PS417_22610 0.29 -0.9 4,896,368 + PS417_22610 0.29 -0.7 4,896,368 + PS417_22610 0.29 -2.2 4,896,568 - PS417_22610 0.84 -0.1 4,896,832 - +0.6 4,896,832 - +0.8 4,896,834 + -1.3 4,896,835 - -0.1 4,896,835 - +0.8 4,896,944 + PS417_22615 0.25 +0.6 4,897,058 + PS417_22615 0.55 +0.3 4,897,059 - PS417_22615 0.56 +1.4 4,897,059 - PS417_22615 0.56 +1.7 4,897,059 - PS417_22615 0.56 +0.9 4,897,130 + PS417_22615 0.75 +0.3 4,897,131 - PS417_22615 0.75 +2.6 4,897,324 + +1.2 4,897,344 + +3.9 4,897,359 + +4.3 4,897,359 + +5.0 4,897,362 + +4.2 4,897,362 + +3.5 4,897,363 - +6.4
Or see this region's nucleotide sequence