Strain Fitness in Pseudomonas simiae WCS417 around PS417_19890

Experiment: Phosphomycin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19880 and PS417_19885 are separated by 53 nucleotidesPS417_19885 and PS417_19890 are separated by 71 nucleotidesPS417_19890 and PS417_19895 are separated by 242 nucleotides PS417_19880: PS417_19880 - flagellar basal body L-ring protein, at 4,317,791 to 4,318,486 _19880 PS417_19885: PS417_19885 - flagellar basal body rod protein FlgG, at 4,318,540 to 4,319,325 _19885 PS417_19890: PS417_19890 - flagellar basal body rod protein FlgF, at 4,319,397 to 4,320,137 _19890 PS417_19895: PS417_19895 - ATPase AAA, at 4,320,380 to 4,321,942 _19895 Position (kb) 4319 4320 4321Strain fitness (log2 ratio) -1 0 1 2at 4318.477 kb on - strandat 4318.531 kb on + strandat 4318.532 kb on - strandat 4318.541 kb on + strandat 4318.985 kb on + strand, within PS417_19885at 4318.986 kb on - strand, within PS417_19885at 4319.372 kb on + strandat 4319.373 kb on - strandat 4319.842 kb on + strand, within PS417_19890at 4319.842 kb on + strand, within PS417_19890at 4320.121 kb on + strandat 4320.121 kb on + strandat 4320.121 kb on + strandat 4320.122 kb on - strandat 4320.122 kb on - strandat 4320.122 kb on - strandat 4320.127 kb on + strandat 4320.128 kb on - strandat 4320.128 kb on - strandat 4320.128 kb on - strandat 4320.128 kb on - strandat 4320.179 kb on + strandat 4320.304 kb on + strandat 4320.305 kb on - strandat 4320.332 kb on + strandat 4320.332 kb on + strandat 4320.364 kb on + strandat 4320.365 kb on - strandat 4320.418 kb on + strandat 4320.419 kb on - strandat 4320.487 kb on - strandat 4320.595 kb on + strand, within PS417_19895at 4320.595 kb on + strand, within PS417_19895at 4320.685 kb on - strand, within PS417_19895at 4320.924 kb on + strand, within PS417_19895at 4320.925 kb on - strand, within PS417_19895

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml
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4,318,477 - -0.0
4,318,531 + +0.8
4,318,532 - +0.5
4,318,541 + +0.8
4,318,985 + PS417_19885 0.57 +1.7
4,318,986 - PS417_19885 0.57 +0.0
4,319,372 + +2.1
4,319,373 - +0.3
4,319,842 + PS417_19890 0.60 +1.3
4,319,842 + PS417_19890 0.60 +0.5
4,320,121 + +2.1
4,320,121 + +0.5
4,320,121 + +1.7
4,320,122 - +0.6
4,320,122 - +1.7
4,320,122 - +0.4
4,320,127 + +0.3
4,320,128 - +0.6
4,320,128 - +2.0
4,320,128 - +2.6
4,320,128 - -0.1
4,320,179 + +0.6
4,320,304 + +0.2
4,320,305 - -0.3
4,320,332 + +0.1
4,320,332 + +0.8
4,320,364 + -0.5
4,320,365 - -0.4
4,320,418 + -0.9
4,320,419 - +0.2
4,320,487 - +1.7
4,320,595 + PS417_19895 0.14 -0.2
4,320,595 + PS417_19895 0.14 -0.0
4,320,685 - PS417_19895 0.20 +0.2
4,320,924 + PS417_19895 0.35 -0.5
4,320,925 - PS417_19895 0.35 -0.4

Or see this region's nucleotide sequence