Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19880 and PS417_19885 are separated by 53 nucleotides PS417_19885 and PS417_19890 are separated by 71 nucleotides PS417_19890 and PS417_19895 are separated by 242 nucleotides
PS417_19880: PS417_19880 - flagellar basal body L-ring protein, at 4,317,791 to 4,318,486
_19880
PS417_19885: PS417_19885 - flagellar basal body rod protein FlgG, at 4,318,540 to 4,319,325
_19885
PS417_19890: PS417_19890 - flagellar basal body rod protein FlgF, at 4,319,397 to 4,320,137
_19890
PS417_19895: PS417_19895 - ATPase AAA, at 4,320,380 to 4,321,942
_19895
Position (kb)
4319
4320
4321 Strain fitness (log2 ratio)
-1
0
1
2 at 4318.477 kb on - strand at 4318.531 kb on + strand at 4318.532 kb on - strand at 4318.541 kb on + strand at 4318.985 kb on + strand, within PS417_19885 at 4318.986 kb on - strand, within PS417_19885 at 4319.372 kb on + strand at 4319.373 kb on - strand at 4319.842 kb on + strand, within PS417_19890 at 4319.842 kb on + strand, within PS417_19890 at 4320.121 kb on + strand at 4320.121 kb on + strand at 4320.121 kb on + strand at 4320.122 kb on - strand at 4320.122 kb on - strand at 4320.122 kb on - strand at 4320.127 kb on + strand at 4320.128 kb on - strand at 4320.128 kb on - strand at 4320.128 kb on - strand at 4320.128 kb on - strand at 4320.179 kb on + strand at 4320.304 kb on + strand at 4320.305 kb on - strand at 4320.332 kb on + strand at 4320.332 kb on + strand at 4320.364 kb on + strand at 4320.365 kb on - strand at 4320.418 kb on + strand at 4320.419 kb on - strand at 4320.487 kb on - strand at 4320.595 kb on + strand, within PS417_19895 at 4320.595 kb on + strand, within PS417_19895 at 4320.685 kb on - strand, within PS417_19895 at 4320.924 kb on + strand, within PS417_19895 at 4320.925 kb on - strand, within PS417_19895
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 4,318,477 - -0.0 4,318,531 + +0.8 4,318,532 - +0.5 4,318,541 + +0.8 4,318,985 + PS417_19885 0.57 +1.7 4,318,986 - PS417_19885 0.57 +0.0 4,319,372 + +2.1 4,319,373 - +0.3 4,319,842 + PS417_19890 0.60 +1.3 4,319,842 + PS417_19890 0.60 +0.5 4,320,121 + +2.1 4,320,121 + +0.5 4,320,121 + +1.7 4,320,122 - +0.6 4,320,122 - +1.7 4,320,122 - +0.4 4,320,127 + +0.3 4,320,128 - +0.6 4,320,128 - +2.0 4,320,128 - +2.6 4,320,128 - -0.1 4,320,179 + +0.6 4,320,304 + +0.2 4,320,305 - -0.3 4,320,332 + +0.1 4,320,332 + +0.8 4,320,364 + -0.5 4,320,365 - -0.4 4,320,418 + -0.9 4,320,419 - +0.2 4,320,487 - +1.7 4,320,595 + PS417_19895 0.14 -0.2 4,320,595 + PS417_19895 0.14 -0.0 4,320,685 - PS417_19895 0.20 +0.2 4,320,924 + PS417_19895 0.35 -0.5 4,320,925 - PS417_19895 0.35 -0.4
Or see this region's nucleotide sequence