Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19870 and PS417_19875 are separated by 4 nucleotides PS417_19875 and PS417_19880 are separated by 9 nucleotides PS417_19880 and PS417_19885 are separated by 53 nucleotides
PS417_19870: PS417_19870 - flagellar rod assembly protein FlgJ, at 4,315,399 to 4,316,670
_19870
PS417_19875: PS417_19875 - flagellar P-ring protein FlgI, at 4,316,675 to 4,317,781
_19875
PS417_19880: PS417_19880 - flagellar basal body L-ring protein, at 4,317,791 to 4,318,486
_19880
PS417_19885: PS417_19885 - flagellar basal body rod protein FlgG, at 4,318,540 to 4,319,325
_19885
Position (kb)
4316
4317
4318 Strain fitness (log2 ratio)
-1
0
1
2 at 4316.230 kb on + strand, within PS417_19870 at 4316.420 kb on + strand, within PS417_19870 at 4316.420 kb on + strand at 4316.432 kb on + strand, within PS417_19870 at 4316.616 kb on - strand at 4316.616 kb on - strand at 4317.278 kb on - strand, within PS417_19875 at 4317.778 kb on + strand at 4317.793 kb on - strand at 4317.793 kb on - strand at 4318.004 kb on + strand, within PS417_19880 at 4318.028 kb on + strand, within PS417_19880 at 4318.029 kb on - strand, within PS417_19880 at 4318.116 kb on + strand, within PS417_19880 at 4318.199 kb on - strand, within PS417_19880 at 4318.339 kb on - strand, within PS417_19880 at 4318.375 kb on + strand, within PS417_19880 at 4318.376 kb on - strand, within PS417_19880 at 4318.376 kb on - strand, within PS417_19880 at 4318.395 kb on + strand, within PS417_19880 at 4318.395 kb on + strand, within PS417_19880 at 4318.396 kb on - strand, within PS417_19880 at 4318.477 kb on - strand at 4318.531 kb on + strand at 4318.532 kb on - strand at 4318.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 4,316,230 + PS417_19870 0.65 +1.3 4,316,420 + PS417_19870 0.80 +0.7 4,316,420 + +0.7 4,316,432 + PS417_19870 0.81 +0.9 4,316,616 - -0.5 4,316,616 - -0.6 4,317,278 - PS417_19875 0.54 -0.3 4,317,778 + -0.1 4,317,793 - +2.3 4,317,793 - +0.3 4,318,004 + PS417_19880 0.31 +0.6 4,318,028 + PS417_19880 0.34 +2.7 4,318,029 - PS417_19880 0.34 +0.3 4,318,116 + PS417_19880 0.47 +0.8 4,318,199 - PS417_19880 0.59 +0.4 4,318,339 - PS417_19880 0.79 -0.5 4,318,375 + PS417_19880 0.84 +0.7 4,318,376 - PS417_19880 0.84 +0.7 4,318,376 - PS417_19880 0.84 +0.8 4,318,395 + PS417_19880 0.87 -0.0 4,318,395 + PS417_19880 0.87 +0.5 4,318,396 - PS417_19880 0.87 +0.3 4,318,477 - -0.0 4,318,531 + +0.8 4,318,532 - +0.5 4,318,541 + +0.8
Or see this region's nucleotide sequence