Strain Fitness in Pseudomonas simiae WCS417 around PS417_19815

Experiment: Phosphomycin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19805 and PS417_19810 are separated by 16 nucleotidesPS417_19810 and PS417_19815 are separated by 131 nucleotidesPS417_19815 and PS417_19820 are separated by 7 nucleotides PS417_19805: PS417_19805 - flagellar M-ring protein FliF, at 4,299,460 to 4,301,238 _19805 PS417_19810: PS417_19810 - flagellar hook-basal body protein FliE, at 4,301,255 to 4,301,584 _19810 PS417_19815: PS417_19815 - Fis family transcriptional regulator, at 4,301,716 to 4,303,092 _19815 PS417_19820: PS417_19820 - histidine kinase, at 4,303,100 to 4,304,311 _19820 Position (kb) 4301 4302 4303 4304Strain fitness (log2 ratio) -2 -1 0 1at 4301.244 kb on - strandat 4301.283 kb on + strandat 4301.303 kb on - strand, within PS417_19810at 4301.303 kb on - strand, within PS417_19810at 4301.634 kb on + strandat 4301.634 kb on + strandat 4301.635 kb on - strandat 4301.645 kb on + strandat 4301.718 kb on - strandat 4301.718 kb on - strandat 4301.728 kb on + strandat 4301.729 kb on - strandat 4301.729 kb on - strandat 4301.732 kb on + strandat 4301.732 kb on + strandat 4301.733 kb on - strandat 4301.733 kb on - strandat 4301.733 kb on - strandat 4302.585 kb on - strand, within PS417_19815at 4303.008 kb on - strandat 4303.092 kb on + strandat 4303.102 kb on - strandat 4303.256 kb on - strand, within PS417_19820at 4303.347 kb on + strand, within PS417_19820at 4303.348 kb on - strand, within PS417_19820at 4303.588 kb on + strand, within PS417_19820at 4303.692 kb on + strand, within PS417_19820at 4303.692 kb on + strand, within PS417_19820at 4303.693 kb on - strand, within PS417_19820at 4303.693 kb on - strand, within PS417_19820at 4303.693 kb on - strand, within PS417_19820

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml
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4,301,244 - -2.6
4,301,283 + -0.3
4,301,303 - PS417_19810 0.15 -0.3
4,301,303 - PS417_19810 0.15 -0.0
4,301,634 + +0.1
4,301,634 + -1.2
4,301,635 - -1.6
4,301,645 + -2.7
4,301,718 - +1.7
4,301,718 - +0.1
4,301,728 + -1.3
4,301,729 - -0.4
4,301,729 - +0.3
4,301,732 + -1.1
4,301,732 + +0.3
4,301,733 - -1.8
4,301,733 - +0.8
4,301,733 - +0.1
4,302,585 - PS417_19815 0.63 -0.9
4,303,008 - +1.7
4,303,092 + +0.6
4,303,102 - -0.5
4,303,256 - PS417_19820 0.13 +0.2
4,303,347 + PS417_19820 0.20 +0.5
4,303,348 - PS417_19820 0.20 +0.2
4,303,588 + PS417_19820 0.40 +1.0
4,303,692 + PS417_19820 0.49 +0.0
4,303,692 + PS417_19820 0.49 -0.6
4,303,693 - PS417_19820 0.49 -0.2
4,303,693 - PS417_19820 0.49 -0.4
4,303,693 - PS417_19820 0.49 +0.6

Or see this region's nucleotide sequence