Strain Fitness in Pseudomonas simiae WCS417 around PS417_19700

Experiment: Phosphomycin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19690 and PS417_19695 are separated by 155 nucleotidesPS417_19695 and PS417_19700 overlap by 4 nucleotidesPS417_19700 and PS417_19705 are separated by 106 nucleotides PS417_19690: PS417_19690 - histidine kinase, at 4,279,674 to 4,280,060 _19690 PS417_19695: PS417_19695 - flagellar biosynthesis sigma factor, at 4,280,216 to 4,280,956 _19695 PS417_19700: PS417_19700 - cobyrinic acid a,c-diamide synthase, at 4,280,953 to 4,281,786 _19700 PS417_19705: PS417_19705 - flagellar biosynthesis regulator FlhF, at 4,281,893 to 4,283,209 _19705 Position (kb) 4280 4281 4282Strain fitness (log2 ratio) -1 0 1at 4280.080 kb on + strandat 4280.125 kb on + strandat 4280.126 kb on - strandat 4280.126 kb on - strandat 4280.347 kb on - strand, within PS417_19695at 4280.446 kb on + strand, within PS417_19695at 4280.446 kb on + strand, within PS417_19695at 4280.533 kb on + strand, within PS417_19695at 4280.554 kb on - strand, within PS417_19695at 4280.736 kb on + strand, within PS417_19695at 4280.736 kb on + strand, within PS417_19695at 4280.737 kb on - strandat 4280.737 kb on - strand, within PS417_19695at 4280.769 kb on + strand, within PS417_19695at 4280.769 kb on + strand, within PS417_19695at 4280.770 kb on - strand, within PS417_19695at 4280.770 kb on - strand, within PS417_19695at 4280.941 kb on - strandat 4280.956 kb on + strandat 4281.823 kb on - strandat 4281.864 kb on - strandat 4282.474 kb on - strand, within PS417_19705at 4282.482 kb on - strand, within PS417_19705

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml
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4,280,080 + +0.4
4,280,125 + +0.5
4,280,126 - -1.7
4,280,126 - -0.3
4,280,347 - PS417_19695 0.18 +1.2
4,280,446 + PS417_19695 0.31 +0.5
4,280,446 + PS417_19695 0.31 +0.4
4,280,533 + PS417_19695 0.43 +1.3
4,280,554 - PS417_19695 0.46 +0.9
4,280,736 + PS417_19695 0.70 +0.3
4,280,736 + PS417_19695 0.70 +0.7
4,280,737 - -0.3
4,280,737 - PS417_19695 0.70 -0.3
4,280,769 + PS417_19695 0.75 +0.4
4,280,769 + PS417_19695 0.75 +0.7
4,280,770 - PS417_19695 0.75 -0.5
4,280,770 - PS417_19695 0.75 +0.3
4,280,941 - +0.7
4,280,956 + +0.8
4,281,823 - -0.9
4,281,864 - -1.0
4,282,474 - PS417_19705 0.44 -0.3
4,282,482 - PS417_19705 0.45 +0.3

Or see this region's nucleotide sequence