Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16960 and PS417_16965 are separated by 80 nucleotides PS417_16965 and PS417_16970 overlap by 4 nucleotides
PS417_16960: PS417_16960 - fimbrial protein, at 3,700,087 to 3,702,573
_16960
PS417_16965: PS417_16965 - hypothetical protein, at 3,702,654 to 3,706,328
_16965
PS417_16970: PS417_16970 - membrane protein, at 3,706,325 to 3,708,052
_16970
Position (kb)
3702
3703
3704
3705
3706
3707 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3701.686 kb on + strand, within PS417_16960 at 3701.686 kb on + strand, within PS417_16960 at 3701.687 kb on - strand, within PS417_16960 at 3701.888 kb on - strand, within PS417_16960 at 3701.890 kb on + strand, within PS417_16960 at 3701.891 kb on - strand, within PS417_16960 at 3701.984 kb on - strand, within PS417_16960 at 3702.181 kb on - strand, within PS417_16960 at 3702.302 kb on - strand, within PS417_16960 at 3702.625 kb on - strand at 3702.671 kb on - strand at 3702.715 kb on + strand at 3702.950 kb on + strand at 3702.950 kb on + strand at 3702.951 kb on - strand at 3702.951 kb on - strand at 3702.951 kb on - strand at 3702.951 kb on - strand at 3703.126 kb on + strand, within PS417_16965 at 3703.170 kb on + strand, within PS417_16965 at 3703.170 kb on + strand, within PS417_16965 at 3703.791 kb on - strand, within PS417_16965 at 3704.020 kb on + strand, within PS417_16965 at 3704.365 kb on - strand, within PS417_16965 at 3705.042 kb on - strand, within PS417_16965 at 3705.205 kb on + strand, within PS417_16965 at 3705.206 kb on - strand, within PS417_16965 at 3705.206 kb on - strand, within PS417_16965 at 3705.206 kb on - strand, within PS417_16965 at 3705.220 kb on + strand, within PS417_16965 at 3705.471 kb on + strand, within PS417_16965 at 3706.078 kb on - strand at 3706.484 kb on - strand at 3706.561 kb on - strand, within PS417_16970 at 3706.676 kb on - strand, within PS417_16970 at 3706.770 kb on + strand, within PS417_16970 at 3706.770 kb on + strand, within PS417_16970 at 3706.771 kb on - strand, within PS417_16970 at 3706.873 kb on - strand, within PS417_16970 at 3706.878 kb on + strand, within PS417_16970 at 3706.879 kb on - strand, within PS417_16970 at 3706.903 kb on + strand, within PS417_16970 at 3706.947 kb on + strand, within PS417_16970 at 3706.990 kb on + strand, within PS417_16970 at 3706.991 kb on - strand, within PS417_16970 at 3707.164 kb on - strand, within PS417_16970
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 3,701,686 + PS417_16960 0.64 +0.5 3,701,686 + PS417_16960 0.64 -1.1 3,701,687 - PS417_16960 0.64 +0.9 3,701,888 - PS417_16960 0.72 +0.9 3,701,890 + PS417_16960 0.72 -0.3 3,701,891 - PS417_16960 0.73 +0.2 3,701,984 - PS417_16960 0.76 -0.2 3,702,181 - PS417_16960 0.84 -0.5 3,702,302 - PS417_16960 0.89 +1.2 3,702,625 - +0.2 3,702,671 - +1.0 3,702,715 + -0.7 3,702,950 + +3.2 3,702,950 + -1.0 3,702,951 - -0.8 3,702,951 - +0.2 3,702,951 - +0.4 3,702,951 - -0.4 3,703,126 + PS417_16965 0.13 -1.7 3,703,170 + PS417_16965 0.14 -0.8 3,703,170 + PS417_16965 0.14 -1.6 3,703,791 - PS417_16965 0.31 -1.7 3,704,020 + PS417_16965 0.37 +0.5 3,704,365 - PS417_16965 0.47 -0.4 3,705,042 - PS417_16965 0.65 -0.5 3,705,205 + PS417_16965 0.69 -2.0 3,705,206 - PS417_16965 0.69 -0.5 3,705,206 - PS417_16965 0.69 -1.0 3,705,206 - PS417_16965 0.69 +1.6 3,705,220 + PS417_16965 0.70 -1.0 3,705,471 + PS417_16965 0.77 -0.7 3,706,078 - -0.6 3,706,484 - +0.3 3,706,561 - PS417_16970 0.14 -0.4 3,706,676 - PS417_16970 0.20 -0.9 3,706,770 + PS417_16970 0.26 -0.2 3,706,770 + PS417_16970 0.26 -0.4 3,706,771 - PS417_16970 0.26 -1.0 3,706,873 - PS417_16970 0.32 -0.6 3,706,878 + PS417_16970 0.32 -0.4 3,706,879 - PS417_16970 0.32 +0.1 3,706,903 + PS417_16970 0.33 -0.2 3,706,947 + PS417_16970 0.36 -0.2 3,706,990 + PS417_16970 0.38 +1.2 3,706,991 - PS417_16970 0.39 +0.5 3,707,164 - PS417_16970 0.49 +0.5
Or see this region's nucleotide sequence