Strain Fitness in Pseudomonas simiae WCS417 around PS417_16965

Experiment: Phosphomycin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16960 and PS417_16965 are separated by 80 nucleotidesPS417_16965 and PS417_16970 overlap by 4 nucleotides PS417_16960: PS417_16960 - fimbrial protein, at 3,700,087 to 3,702,573 _16960 PS417_16965: PS417_16965 - hypothetical protein, at 3,702,654 to 3,706,328 _16965 PS417_16970: PS417_16970 - membrane protein, at 3,706,325 to 3,708,052 _16970 Position (kb) 3702 3703 3704 3705 3706 3707Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3701.686 kb on + strand, within PS417_16960at 3701.686 kb on + strand, within PS417_16960at 3701.687 kb on - strand, within PS417_16960at 3701.888 kb on - strand, within PS417_16960at 3701.890 kb on + strand, within PS417_16960at 3701.891 kb on - strand, within PS417_16960at 3701.984 kb on - strand, within PS417_16960at 3702.181 kb on - strand, within PS417_16960at 3702.302 kb on - strand, within PS417_16960at 3702.625 kb on - strandat 3702.671 kb on - strandat 3702.715 kb on + strandat 3702.950 kb on + strandat 3702.950 kb on + strandat 3702.951 kb on - strandat 3702.951 kb on - strandat 3702.951 kb on - strandat 3702.951 kb on - strandat 3703.126 kb on + strand, within PS417_16965at 3703.170 kb on + strand, within PS417_16965at 3703.170 kb on + strand, within PS417_16965at 3703.791 kb on - strand, within PS417_16965at 3704.020 kb on + strand, within PS417_16965at 3704.365 kb on - strand, within PS417_16965at 3705.042 kb on - strand, within PS417_16965at 3705.205 kb on + strand, within PS417_16965at 3705.206 kb on - strand, within PS417_16965at 3705.206 kb on - strand, within PS417_16965at 3705.206 kb on - strand, within PS417_16965at 3705.220 kb on + strand, within PS417_16965at 3705.471 kb on + strand, within PS417_16965at 3706.078 kb on - strandat 3706.484 kb on - strandat 3706.561 kb on - strand, within PS417_16970at 3706.676 kb on - strand, within PS417_16970at 3706.770 kb on + strand, within PS417_16970at 3706.770 kb on + strand, within PS417_16970at 3706.771 kb on - strand, within PS417_16970at 3706.873 kb on - strand, within PS417_16970at 3706.878 kb on + strand, within PS417_16970at 3706.879 kb on - strand, within PS417_16970at 3706.903 kb on + strand, within PS417_16970at 3706.947 kb on + strand, within PS417_16970at 3706.990 kb on + strand, within PS417_16970at 3706.991 kb on - strand, within PS417_16970at 3707.164 kb on - strand, within PS417_16970

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml
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3,701,686 + PS417_16960 0.64 +0.5
3,701,686 + PS417_16960 0.64 -1.1
3,701,687 - PS417_16960 0.64 +0.9
3,701,888 - PS417_16960 0.72 +0.9
3,701,890 + PS417_16960 0.72 -0.3
3,701,891 - PS417_16960 0.73 +0.2
3,701,984 - PS417_16960 0.76 -0.2
3,702,181 - PS417_16960 0.84 -0.5
3,702,302 - PS417_16960 0.89 +1.2
3,702,625 - +0.2
3,702,671 - +1.0
3,702,715 + -0.7
3,702,950 + +3.2
3,702,950 + -1.0
3,702,951 - -0.8
3,702,951 - +0.2
3,702,951 - +0.4
3,702,951 - -0.4
3,703,126 + PS417_16965 0.13 -1.7
3,703,170 + PS417_16965 0.14 -0.8
3,703,170 + PS417_16965 0.14 -1.6
3,703,791 - PS417_16965 0.31 -1.7
3,704,020 + PS417_16965 0.37 +0.5
3,704,365 - PS417_16965 0.47 -0.4
3,705,042 - PS417_16965 0.65 -0.5
3,705,205 + PS417_16965 0.69 -2.0
3,705,206 - PS417_16965 0.69 -0.5
3,705,206 - PS417_16965 0.69 -1.0
3,705,206 - PS417_16965 0.69 +1.6
3,705,220 + PS417_16965 0.70 -1.0
3,705,471 + PS417_16965 0.77 -0.7
3,706,078 - -0.6
3,706,484 - +0.3
3,706,561 - PS417_16970 0.14 -0.4
3,706,676 - PS417_16970 0.20 -0.9
3,706,770 + PS417_16970 0.26 -0.2
3,706,770 + PS417_16970 0.26 -0.4
3,706,771 - PS417_16970 0.26 -1.0
3,706,873 - PS417_16970 0.32 -0.6
3,706,878 + PS417_16970 0.32 -0.4
3,706,879 - PS417_16970 0.32 +0.1
3,706,903 + PS417_16970 0.33 -0.2
3,706,947 + PS417_16970 0.36 -0.2
3,706,990 + PS417_16970 0.38 +1.2
3,706,991 - PS417_16970 0.39 +0.5
3,707,164 - PS417_16970 0.49 +0.5

Or see this region's nucleotide sequence