Strain Fitness in Pseudomonas simiae WCS417 around PS417_01215

Experiment: Phosphomycin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01210 and PS417_01215 are separated by 56 nucleotidesPS417_01215 and PS417_01220 are separated by 28 nucleotidesPS417_01220 and PS417_01230 are separated by 610 nucleotides PS417_01210: PS417_01210 - hypothetical protein, at 265,433 to 266,974 _01210 PS417_01215: PS417_01215 - membrane protein, at 267,031 to 267,882 _01215 PS417_01220: PS417_01220 - hypothetical protein, at 267,911 to 268,267 _01220 PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123 _01230 Position (kb) 267 268Strain fitness (log2 ratio) -2 -1 0 1 2at 266.204 kb on + strand, within PS417_01210at 266.204 kb on + strand, within PS417_01210at 266.205 kb on - strand, within PS417_01210at 266.315 kb on + strand, within PS417_01210at 266.316 kb on - strand, within PS417_01210at 266.487 kb on - strand, within PS417_01210at 266.504 kb on + strand, within PS417_01210at 266.609 kb on + strand, within PS417_01210at 266.609 kb on + strand, within PS417_01210at 266.851 kb on + strandat 266.852 kb on - strandat 266.972 kb on + strandat 266.972 kb on + strandat 266.973 kb on - strandat 267.032 kb on + strandat 267.156 kb on + strand, within PS417_01215at 267.156 kb on + strand, within PS417_01215at 267.156 kb on + strand, within PS417_01215at 267.157 kb on - strand, within PS417_01215at 267.410 kb on + strand, within PS417_01215at 267.591 kb on - strand, within PS417_01215at 267.591 kb on - strand, within PS417_01215at 267.795 kb on - strand, within PS417_01215at 267.897 kb on - strandat 267.897 kb on - strandat 267.897 kb on - strandat 267.897 kb on - strandat 267.966 kb on + strand, within PS417_01220at 267.967 kb on - strand, within PS417_01220at 267.967 kb on - strand, within PS417_01220at 268.054 kb on - strand, within PS417_01220at 268.059 kb on + strand, within PS417_01220at 268.059 kb on + strand, within PS417_01220at 268.059 kb on + strand, within PS417_01220at 268.060 kb on - strand, within PS417_01220at 268.060 kb on - strand, within PS417_01220at 268.060 kb on - strand, within PS417_01220at 268.358 kb on + strandat 268.358 kb on + strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.402 kb on - strandat 268.402 kb on - strandat 268.402 kb on - strandat 268.406 kb on + strandat 268.406 kb on + strandat 268.409 kb on + strandat 268.409 kb on + strandat 268.409 kb on + strandat 268.423 kb on + strandat 268.500 kb on + strandat 268.501 kb on - strandat 268.501 kb on - strandat 268.501 kb on - strandat 268.504 kb on + strandat 268.504 kb on + strandat 268.598 kb on + strandat 268.598 kb on + strandat 268.599 kb on - strandat 268.599 kb on - strandat 268.599 kb on - strandat 268.648 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.653 kb on - strandat 268.820 kb on + strandat 268.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml
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266,204 + PS417_01210 0.50 +0.6
266,204 + PS417_01210 0.50 -1.8
266,205 - PS417_01210 0.50 -2.0
266,315 + PS417_01210 0.57 -0.7
266,316 - PS417_01210 0.57 -0.9
266,487 - PS417_01210 0.68 -1.9
266,504 + PS417_01210 0.69 +0.4
266,609 + PS417_01210 0.76 -0.4
266,609 + PS417_01210 0.76 +1.6
266,851 + +0.8
266,852 - -1.4
266,972 + -1.3
266,972 + -0.5
266,973 - -0.4
267,032 + +0.6
267,156 + PS417_01215 0.15 -0.5
267,156 + PS417_01215 0.15 -0.5
267,156 + PS417_01215 0.15 -0.7
267,157 - PS417_01215 0.15 -1.2
267,410 + PS417_01215 0.44 -0.5
267,591 - PS417_01215 0.66 -0.5
267,591 - PS417_01215 0.66 -1.3
267,795 - PS417_01215 0.90 -0.3
267,897 - -0.5
267,897 - -1.6
267,897 - +0.0
267,897 - +0.6
267,966 + PS417_01220 0.15 -0.4
267,967 - PS417_01220 0.16 -0.3
267,967 - PS417_01220 0.16 +0.0
268,054 - PS417_01220 0.40 +0.3
268,059 + PS417_01220 0.41 +0.4
268,059 + PS417_01220 0.41 -0.5
268,059 + PS417_01220 0.41 -0.4
268,060 - PS417_01220 0.42 -0.1
268,060 - PS417_01220 0.42 +1.2
268,060 - PS417_01220 0.42 -0.5
268,358 + -0.4
268,358 + +0.1
268,359 - -1.2
268,359 - +0.6
268,397 + +0.6
268,397 + +0.3
268,397 + +0.3
268,397 + -0.9
268,397 + -0.1
268,401 + +0.2
268,401 + +0.3
268,401 + -0.0
268,401 + -1.0
268,402 - -1.1
268,402 - -0.8
268,402 - +0.1
268,406 + -0.7
268,406 + +0.1
268,409 + -0.6
268,409 + -0.0
268,409 + +0.9
268,423 + -0.2
268,500 + +1.2
268,501 - -0.7
268,501 - +0.2
268,501 - +0.3
268,504 + +0.3
268,504 + -0.4
268,598 + -0.0
268,598 + -0.2
268,599 - +0.0
268,599 - -2.0
268,599 - -0.4
268,648 + +0.0
268,652 + -0.6
268,652 + +2.1
268,652 + +0.5
268,652 + +1.8
268,652 + +0.1
268,653 - -0.1
268,820 + +0.5
268,820 + +0.1

Or see this region's nucleotide sequence