Strain Fitness in Pseudomonas simiae WCS417 around PS417_12220
Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,656,028 | + | PS417_12215 | 0.44 | -0.9 | |
2,656,080 | - | PS417_12215 | 0.48 | +0.4 | |
2,656,185 | - | PS417_12215 | 0.55 | -1.8 | |
2,656,289 | + | PS417_12215 | 0.63 | -0.5 | |
2,656,289 | + | PS417_12215 | 0.63 | +1.1 | |
2,656,289 | + | PS417_12215 | 0.63 | -0.6 | |
2,656,346 | - | PS417_12215 | 0.67 | -1.8 | |
2,656,370 | + | PS417_12215 | 0.69 | -1.2 | |
2,656,385 | + | PS417_12215 | 0.70 | -0.5 | |
2,656,458 | - | PS417_12215 | 0.75 | -0.1 | |
2,656,458 | - | PS417_12215 | 0.75 | +0.2 | |
2,656,587 | + | PS417_12215 | 0.84 | +1.2 | |
2,656,894 | - | -0.6 | |||
2,657,323 | + | PS417_12220 | 0.53 | +1.0 | |
2,657,360 | + | PS417_12220 | 0.58 | +0.9 | |
2,657,360 | + | PS417_12220 | 0.58 | +0.5 | |
2,657,362 | + | PS417_12220 | 0.58 | +0.5 | |
2,657,628 | + | +0.7 | |||
2,657,642 | - | +1.1 | |||
2,657,642 | - | +0.8 | |||
2,657,676 | + | +0.9 | |||
2,657,677 | - | +0.4 | |||
2,657,677 | - | +0.2 | |||
2,657,718 | + | +0.1 | |||
2,657,718 | + | +0.0 |
Or see this region's nucleotide sequence